View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_3 (Length: 683)
Name: NF19906_low_3
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_3 |
 | |
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| [»] scaffold0374 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 643; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Original strand, 42874980 - 42875654
Alignment:
| Q |
1 |
gttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaatggtaagagatctgccacgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
42874980 |
gttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaatggtaagagatctgccacatca |
42875079 |
T |
|
| Q |
101 |
attggaaatgtaaactttctaggttgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaagagtcctacatgaaattaacaaat |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875080 |
attggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaagagtcctacatgaaattaacaaat |
42875179 |
T |
|
| Q |
201 |
caagatcaaaattaatttttaccattgtagaatcaaacatcctccaaatgaatgtaatattgatatgaataaaaatttacttacttgagagatttttgaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42875180 |
caagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatatgaattaaaatttacttacttgagagatttttgaa |
42875279 |
T |
|
| Q |
301 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875280 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
42875379 |
T |
|
| Q |
401 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42875380 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
42875479 |
T |
|
| Q |
501 |
ttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaacactgc |
600 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42875480 |
ttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaacactgc |
42875579 |
T |
|
| Q |
601 |
ccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactatgagagttatgtttgatgatg |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42875580 |
ccatgttgttatttttgggttggactaaggttcaatgttaagattggtacactatgagagttatgtttgatgatg |
42875654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 1 - 675
Target Start/End: Complemental strand, 42890321 - 42889647
Alignment:
| Q |
1 |
gttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaatggtaagagatctgccacgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42890321 |
gttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaatggtaagagatctgccacatca |
42890222 |
T |
|
| Q |
101 |
attggaaatgtaaactttctaggttgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaagagtcctacatgaaattaacaaat |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42890221 |
attggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaagagtcctacatgaaattaacaaat |
42890122 |
T |
|
| Q |
201 |
caagatcaaaattaatttttaccattgtagaatcaaacatcctccaaatgaatgtaatattgatatgaataaaaatttacttacttgagagatttttgaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42890121 |
caagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatatgaattaaaatttacttacttgagagatttttgaa |
42890022 |
T |
|
| Q |
301 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42890021 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
42889922 |
T |
|
| Q |
401 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42889921 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
42889822 |
T |
|
| Q |
501 |
ttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaacactgc |
600 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42889821 |
ttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaacactgc |
42889722 |
T |
|
| Q |
601 |
ccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactatgagagttatgtttgatgatg |
675 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42889721 |
ccatgttgttatttttgggttggactaaggttcaatgttaagattggtacactatgagagttatgtttgatgatg |
42889647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Original strand, 42884111 - 42884768
Alignment:
| Q |
1 |
gttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaatggtaagagatctgccacgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42884111 |
gttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacccttcacatcaaatggtaagagatctgccacatca |
42884210 |
T |
|
| Q |
101 |
attggaaatgtaaactttctaggttgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaagagtcctacatgaaattaacaaat |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42884211 |
attggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtagtccaattgaagagtcctacatgaaattaacaaat |
42884310 |
T |
|
| Q |
201 |
caagatcaaaattaatttttaccattgtagaatcaaacatcctccaaatgaatgtaatattgatatgaataaaaatttacttacttgagagatttttgaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42884311 |
caagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatatgaattaaaatttacttacttgagagatttttgaa |
42884410 |
T |
|
| Q |
301 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42884411 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
42884510 |
T |
|
| Q |
401 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42884511 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
42884610 |
T |
|
| Q |
501 |
ttcttgcatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaaactttgttgggatttcaacactgc |
600 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42884611 |
ttcttacatgtgaagtcaggggctgatcccattccaaccactggcatcttcaattgactagatgtgtttgtaagaacctttgttgggatttcaacactgc |
42884710 |
T |
|
| Q |
601 |
ccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactatgag |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42884711 |
ccatgttgttatttttgggttggactaaggttcaatgttaagattgttacactttgag |
42884768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 288 - 496
Target Start/End: Original strand, 37505451 - 37505662
Alignment:
| Q |
288 |
agagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctag-tgaca--agaccaa |
384 |
Q |
| |
|
|||||||| || |||||||||| || || | ||||||||| ||||||||||| | ||||||||||||||| || || | ||||| ||| | || |||| |
|
|
| T |
37505451 |
agagatttctgcagagcaggaacaatgagctcaggatgattatcagtaacccataatttagaagtaacaaagagttcatctctagatgaaataagtccaa |
37505550 |
T |
|
| Q |
385 |
gttcaattgcttctttcaaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgat |
484 |
Q |
| |
|
||| || ||||||| | |||||| |||| || || ||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| || |
|
|
| T |
37505551 |
gtttaagtgcttctgcaatagcttctccaacagatttttccacaccatatgcagcagcagcatcaaaatgtctataaccttgtttgatggcttcaaggac |
37505650 |
T |
|
| Q |
485 |
tgcatcttttgt |
496 |
Q |
| |
|
||||||||||| |
|
|
| T |
37505651 |
agcatcttttgt |
37505662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 13285 - 13216
Alignment:
| Q |
280 |
cttacttgagagatttttgaagagcaggaataacaagatgaggatgattttcagtaacccaaagtttaga |
349 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
13285 |
cttactggagtgatttctgaagagcaggaagaacaagatgaggaaaattatcagtaacccaaagtttaga |
13216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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