View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_31 (Length: 407)
Name: NF19906_low_31
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 40454774 - 40454388
Alignment:
| Q |
19 |
ataacggttccataataagtgttacatcattcttatacttaatcaaggtcaatacaagtattaagatataacttgtataaagcgacttctattcgggtga |
118 |
Q |
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| T |
40454774 |
ataacggttccataataagtgttacaccattcttatacttaatcaaggtcaatacaagtattaagatataacttgtataaagcgacttctattcgggtga |
40454675 |
T |
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| Q |
119 |
aacagtcggattttaaatctctgtttttaccacatttgtcccatccaaaactattttaatgtccaaccgtaactcacagcaaagttaaagttatccttcg |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
40454674 |
aacagtcagattttaaatctctgtttttaccacatttgtcccttccaaaactattttaatgtctaaccgtaactcacaacaaagttaaagttatccttcg |
40454575 |
T |
|
| Q |
219 |
taggtttctatatttctttctctgttttcgtcttgtatgtttcttgagcttagcatcaaccttggtgtcttcatcatcactctcattgtcttcattgtgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40454574 |
taggtttctatatttctttctctgttttcgtcttttatgtttcttgagcttagcatcaaccttggtgtcttcatcatcactctcattgtcttcattgtgc |
40454475 |
T |
|
| Q |
319 |
ttcacaacatcgctaaattcattggtgtgttcattttgatcttcaatctgatcaacctctttaggtttactatggtaacggttcatc |
405 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40454474 |
ttcacaacatcactaaactcattggtgtgttcattttgatcttcaatctgatcaacctctttatgtttactatggtaacggttcatc |
40454388 |
T |
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