View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_34 (Length: 375)
Name: NF19906_low_34
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 16936772 - 16936867
Alignment:
| Q |
245 |
ttcataaacttgcaagagatcagatggtagtgcatgtttgtttcatcatcaataacagaacatttgggataattatcatcatatctctttgcattt |
340 |
Q |
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| T |
16936772 |
ttcataaacttgcaagagatcagatggtagtgcatgtttgtttcatcatcaataacagaacatttgggataattatcatcatatctctttgcattt |
16936867 |
T |
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Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 16936503 - 16936585
Alignment:
| Q |
13 |
aatattagcccaaaagaggtgaaaccgacaagatcaacaatgttaagagaacaactttgtaaagatattcataccaccacaac |
95 |
Q |
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| T |
16936503 |
aatattagcccaaaaggggtgaaactgacaagatcaacaatgttaagagaacagctttgtaaagatattcattccaccacaac |
16936585 |
T |
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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 16932925 - 16932963
Alignment:
| Q |
51 |
aatgttaagagaacaactttgtaaagatattcataccac |
89 |
Q |
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| T |
16932925 |
aatgttaagagatcaactttgtaaagaaattcataccac |
16932963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 35545152 - 35545101
Alignment:
| Q |
254 |
ttgcaagagatcagatggtagtgcatgtttgtttcatcatcaataacagaac |
305 |
Q |
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| T |
35545152 |
ttgcaagagatcagatggtagtgcatgtttgtttcatcatctataacagaac |
35545101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 333
Target Start/End: Original strand, 39036167 - 39036247
Alignment:
| Q |
253 |
cttgcaagagatcagatggtagtgcatgtttgtttcatcatcaataacagaacatttgggataattatcatcatatctctt |
333 |
Q |
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| T |
39036167 |
cttgcgagagatcagatggtagtgcatgtttgtttcatcatgaaaaacagaaccgtatggataaatatcatcatttctctt |
39036247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 36026956 - 36026918
Alignment:
| Q |
51 |
aatgttaagagaacaactttgtaaagatattcataccac |
89 |
Q |
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| T |
36026956 |
aatgttaagagatcaactttgtaaagaaattcataccac |
36026918 |
T |
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