View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_35 (Length: 372)
Name: NF19906_low_35
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_35 |
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| [»] chr5 (6 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 37850586 - 37850945
Alignment:
| Q |
13 |
gagatgaattgaaaaggacctctgatcttaacaaaaggatttctaataaacgaggagaaggaaggaagctgtctggccttcataagcaagtgttggaggc |
112 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
37850586 |
gagatgaattgaaaaggacctctgatcttaataaaaggatttctaataaacgaggaggaggaaggaagctgcctgaccttcataagcaagtgttggaggc |
37850685 |
T |
|
| Q |
113 |
tactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtggaactgtttgtgctgtaaagaaggtt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37850686 |
tactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtgaaactgtttgtgctgtaaagaaggtt |
37850785 |
T |
|
| Q |
213 |
gaattcagacggaacaaacaaaagcggctaagtatcacgtgcaacgaagttgaagtcctagggatgtttaagcatcgaaatttaatcaaatgtttggact |
312 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850786 |
gaattcagacggaacaagcaaaagcggctaagtatcacgcgcaacgaagttgaagtcctagggatgtttaagcatcgaaatttaatcaaatgtttggact |
37850885 |
T |
|
| Q |
313 |
actggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37850886 |
actggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttc |
37850945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 101 - 372
Target Start/End: Original strand, 37831843 - 37832114
Alignment:
| Q |
101 |
agtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtggaactgtttgtgct |
200 |
Q |
| |
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||||||| |||||||||||||||||||| | | ||||| ||||| |||| |||||||| |||||||||||| |||||| || ||||| |||| |
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| T |
37831843 |
agtgttgcaggctactgagaacctaaatcaatgttatatcattggcaagggaggacatggtactgtgtacaaagccataattggtcagcatgtttttgct |
37831942 |
T |
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| Q |
201 |
gtaaagaaggttgaattcagacggaacaaacaaaagcggctaagtatcacgtgcaacgaagttgaagtcctagggatgtttaagcatcgaaatttaatca |
300 |
Q |
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||||||||||| ||||| | ||||||| |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |||| |
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| T |
37831943 |
gtaaagaaggtcgaatttgggtggaacaagaaaaagcggctaagtatcatacgcaacgaaattgaagtccttgggatgtttaagcatcgaaatttgatca |
37832042 |
T |
|
| Q |
301 |
aatgtttggactactggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttc |
372 |
Q |
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|| ||||||||||||||| | || ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37832043 |
aacacgcagactactggattggagaggaatatggtttagtcttatatgaattcatggaaaatggaagccttc |
37832114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 92 - 371
Target Start/End: Original strand, 37837325 - 37837604
Alignment:
| Q |
92 |
tcataagcaagtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtggaact |
191 |
Q |
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|||| ||| ||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||| || |
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| T |
37837325 |
tcatgagctagttttggaggctacagagaacctaaatgatcagtatattattggaagaggagcacatggtattgtgtacaaagccataattaatgagcag |
37837424 |
T |
|
| Q |
192 |
gtttgtgctgtaaagaaggttgaattcagacggaacaaacaaaagcggctaagtatcacgtgcaacgaagttgaagtcctagggatgtttaagcatcgaa |
291 |
Q |
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| |||||||||||||||| ||||||| || ||||| |||||| ||| |||||||| | ||||||| |||||||||| || ||| ||||| || |
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| T |
37837425 |
gcttgtgctgtaaagaagtttgaatttggattgaacaggcaaaagtggcgaagtatcatggacaacgaaattgaagtccttaggggccttaggcatcaaa |
37837524 |
T |
|
| Q |
292 |
atttaatcaaatgtttggactactggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagcctt |
371 |
Q |
| |
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|||| |||||||||| | | ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
37837525 |
atttgatcaaatgttggagccactggattggaaatgactatggtttaatcatatataaattcattgaaaatggaagcctt |
37837604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 101 - 372
Target Start/End: Original strand, 37842959 - 37843230
Alignment:
| Q |
101 |
agtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtggaactgtttgtgct |
200 |
Q |
| |
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||||||| ||||||| |||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| | || || | |||| |||| |
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| T |
37842959 |
agtgttgcaggctacagagaacctaagtgatcaatatattattggaagaggagcacatggtattgtgtacaaagctttgcttggtcaacaggtttatgct |
37843058 |
T |
|
| Q |
201 |
gtaaagaaggttgaattcagacggaacaaacaaaagcggctaagtatcacgtgcaacgaagttgaagtcctagggatgtttaagcatcgaaatttaatca |
300 |
Q |
| |
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||||||||| ||||||||| | | |||| |||||||||| |||| | |||||| ||| ||||||| || || |||| |||||||||||| | |||| |
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| T |
37843059 |
gtaaagaagtttgaattcacaagcaacagggtaaagcggctacgtatgatgtgcaatgaaattgaagtgcttggaatgtataagcatcgaaacgtgatca |
37843158 |
T |
|
| Q |
301 |
aatgtttggactactggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttc |
372 |
Q |
| |
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||| ||||||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
37843159 |
aatacgctgactactggattggaaaggactatggtttagtcttgtatgaattcatgaaaaatggaagccttc |
37843230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 355
Target Start/End: Original strand, 28089823 - 28090079
Alignment:
| Q |
102 |
gtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtggaactgtttgtgctg |
201 |
Q |
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|||||||| ||||| ||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| || ||| || | |||||||||| |
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| T |
28089823 |
gtgttggaagctacagagaacctaaatgattggtatattgttggcagaggagcacatggtattgtgtacaaagccatgattggtcaacaggtttgtgctg |
28089922 |
T |
|
| Q |
202 |
taaagaaggttgaattcagacggaacaaacaaaagcggctaagtatcacg---tgcaacgaagttgaagtcc-tagggatgtttaagcatcgaaatttaa |
297 |
Q |
| |
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||||||| |||||||| || ||| ||| ||||| || |||||||| | ||||| ||| ||||||||| ||||| | ||| |||||||||||| | |
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| T |
28089923 |
taaagaaagttgaatttggatggagcaagtaaaagtggtgaagtatcatgcactgcaatgaaattgaagtccttaggggt-cttaggcatcgaaatttga |
28090021 |
T |
|
| Q |
298 |
tcaaatgtttggactactggattggaaatgactatggtttaatcttatatgaattcat |
355 |
Q |
| |
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|||||| || | |||||||||| ||||||||||||||||| || ||||| ||||||| |
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| T |
28090022 |
tcaaatattggagctactggattagaaatgactatggtttagtcatatataaattcat |
28090079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 372
Target Start/End: Original strand, 37844830 - 37845097
Alignment:
| Q |
105 |
ttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaagctataatttgtggaactgtttgtgctgtaa |
204 |
Q |
| |
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||||||||||| |||||||||||||||| ||||||||||| | ||||||||| ||| ||||||||||| |||| || || | | || |||| ||| |
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| T |
37844830 |
ttggaggctacagagaacctaaatgatcactatattattggcaggggagcacattgtagtgtgtacaaagttatacttggtcaacaagcttttgctttaa |
37844929 |
T |
|
| Q |
205 |
agaaggttgaattcagacggaacaaacaaaagcggctaagtatcacgtgcaacgaagttgaagtcctagggatgtttaagcatcgaaatttaatcaaatg |
304 |
Q |
| |
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||||| ||||||| || ||||||| ||| || |||||| ||| || ||| ||| |||||||||| | ||||||||||||| |||||| || |||| |
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|
| T |
37844930 |
agaagtttgaatttggaaggaacaataaaatgcaactaagtgtcatgttcaatgaaattgaagtccttgcaatgtttaagcatcaaaatttgatgaaata |
37845029 |
T |
|
| Q |
305 |
tttggactactggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttc |
372 |
Q |
| |
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|||||||||||||| || ||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
37845030 |
cgcacactactggattggaggggattatggtttagtcttatataaattcatggaaaatggaagccttc |
37845097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 74 - 303
Target Start/End: Original strand, 36866009 - 36866223
Alignment:
| Q |
74 |
aaggaagctgtctggccttcataagcaagtgttggaggctactgagaacctaaatgatcggtatattattggtggaggagcacatggtattgtgtacaaa |
173 |
Q |
| |
|
|||||||||| ||| ||||||| | ||||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||| |
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| T |
36866009 |
aaggaagctgcctgaccttcatgatcaagtgttggaagctacagagaacctaaatgatcaatatattattggt---------------attgtgtacaaa |
36866093 |
T |
|
| Q |
174 |
gctataatttgtggaactgtttgtgctgtaaagaaggttgaattcagacggaacaaacaaaagcggctaagtatcacgtgcaacgaagttgaagtcctag |
273 |
Q |
| |
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|| ||| ||| | || ||||||||| ||||||||||| |||| || ||||||| |||| | |||||||||||| | ||| | || |||||||||| |
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| T |
36866094 |
gccatagtttatcgacgtgtttgtgccataaagaaggttcaatttggatggaacaagcaaaggtggctaagtatcatgcgcagcaaaattgaagtcctta |
36866193 |
T |
|
| Q |
274 |
ggatgtttaagcatcgaaatttaatcaaat |
303 |
Q |
| |
|
| ||| ||| |||| ||||||||||||||| |
|
|
| T |
36866194 |
gaatgattaggcattgaaatttaatcaaat |
36866223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 372
Target Start/End: Complemental strand, 8680207 - 8680165
Alignment:
| Q |
330 |
tatggtttaatcttatatgaattcatggaaaatggaagccttc |
372 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8680207 |
tatggtttactcttatatgaattcatggaaaatggaagccttc |
8680165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 29250597 - 29250535
Alignment:
| Q |
310 |
actactggattggaaatgactatggtttaatcttatatgaattcatggaaaatggaagccttc |
372 |
Q |
| |
|
|||| ||||||||| | || ||||||||| |||| | ||||||||| |||||||||||||||| |
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| T |
29250597 |
actaatggattggataggaatatggtttagtcttgtttgaattcatagaaaatggaagccttc |
29250535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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