View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19906_low_36 (Length: 370)

Name: NF19906_low_36
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19906_low_36
NF19906_low_36
[»] chr6 (27 HSPs)
chr6 (20-202)||(1838660-1838836)
chr6 (207-360)||(1838475-1838628)
chr6 (207-360)||(14790620-14790771)
chr6 (207-360)||(14795648-14795799)
chr6 (251-360)||(20527296-20527407)
chr6 (251-360)||(27649104-27649214)
chr6 (280-360)||(32704418-32704498)
chr6 (251-360)||(19664799-19664909)
chr6 (142-200)||(15535242-15535300)
chr6 (241-360)||(16883677-16883797)
chr6 (143-200)||(19664667-19664724)
chr6 (26-135)||(1841591-1841701)
chr6 (147-191)||(15540765-15540809)
chr6 (300-360)||(30978396-30978455)
chr6 (141-188)||(27649300-27649347)
chr6 (142-197)||(32427489-32427544)
chr6 (314-360)||(13017387-13017433)
chr6 (44-120)||(6526733-6526810)
chr6 (283-358)||(15540574-15540649)
chr6 (50-124)||(6528589-6528667)
chr6 (296-360)||(22221726-22221789)
chr6 (296-360)||(22247561-22247624)
chr6 (310-360)||(12980686-12980736)
chr6 (310-360)||(12983573-12983623)
chr6 (251-360)||(32427303-32427413)
chr6 (241-317)||(11183960-11184037)
chr6 (283-360)||(15535058-15535135)
[»] chr7 (17 HSPs)
chr7 (251-360)||(36843071-36843181)
chr7 (251-360)||(9765803-9765913)
chr7 (207-360)||(6967149-6967300)
chr7 (207-360)||(17866446-17866597)
chr7 (207-360)||(24783410-24783561)
chr7 (280-360)||(17863258-17863338)
chr7 (142-202)||(36842937-36842997)
chr7 (142-200)||(24783596-24783654)
chr7 (305-360)||(23313449-23313504)
chr7 (296-360)||(36222489-36222552)
chr7 (310-361)||(3862100-3862151)
chr7 (314-360)||(23759806-23759852)
chr7 (283-360)||(46846479-46846556)
chr7 (314-360)||(294866-294912)
chr7 (142-188)||(9766000-9766046)
chr7 (283-360)||(23107989-23108066)
chr7 (287-357)||(11279496-11279565)
[»] chr1 (17 HSPs)
chr1 (207-360)||(13495989-13496140)
chr1 (207-360)||(10764921-10765072)
chr1 (207-360)||(13493264-13493415)
chr1 (251-360)||(39546244-39546354)
chr1 (251-360)||(27282241-27282351)
chr1 (283-360)||(32506021-32506098)
chr1 (251-360)||(34066346-34066456)
chr1 (142-200)||(13496174-13496232)
chr1 (296-360)||(1936628-1936691)
chr1 (283-360)||(16190345-16190421)
chr1 (142-197)||(39546431-39546486)
chr1 (142-200)||(16190179-16190237)
chr1 (142-200)||(32505857-32505915)
chr1 (207-239)||(32505953-32505985)
chr1 (310-360)||(22456686-22456736)
chr1 (26-124)||(35231149-35231251)
chr1 (323-360)||(49147899-49147936)
[»] chr5 (10 HSPs)
chr5 (207-360)||(14616521-14616672)
chr5 (251-360)||(22159746-22159856)
chr5 (207-360)||(34405850-34406001)
chr5 (207-360)||(7650034-7650185)
chr5 (141-200)||(14616428-14616487)
chr5 (138-196)||(7649938-7649996)
chr5 (305-359)||(11989054-11989108)
chr5 (296-360)||(33575091-33575154)
chr5 (300-357)||(15532385-15532441)
chr5 (300-357)||(15542567-15542623)
[»] chr3 (9 HSPs)
chr3 (251-360)||(13979488-13979598)
chr3 (142-200)||(13979672-13979730)
chr3 (142-200)||(46731641-46731699)
chr3 (314-360)||(11138766-11138812)
chr3 (314-360)||(22626508-22626554)
chr3 (296-360)||(46731496-46731559)
chr3 (142-202)||(26822039-26822099)
chr3 (142-200)||(3306153-3306213)
chr3 (142-200)||(30157797-30157857)
[»] chr2 (13 HSPs)
chr2 (251-360)||(32575819-32575930)
chr2 (142-200)||(23673345-23673403)
chr2 (141-200)||(36327113-36327172)
chr2 (283-360)||(23673511-23673588)
chr2 (140-188)||(16295097-16295145)
chr2 (142-200)||(32575685-32575743)
chr2 (243-360)||(36326928-36327046)
chr2 (314-360)||(16294900-16294946)
chr2 (301-360)||(40017981-40018040)
chr2 (142-196)||(24384925-24384981)
chr2 (300-357)||(31528394-31528450)
chr2 (142-200)||(32074156-32074216)
chr2 (283-342)||(13710091-13710150)
[»] chr4 (7 HSPs)
chr4 (207-360)||(647296-647447)
chr4 (209-360)||(650570-650719)
chr4 (142-200)||(26062690-26062748)
chr4 (314-360)||(11649431-11649477)
chr4 (314-360)||(26060589-26060635)
chr4 (251-360)||(26062825-26062937)
chr4 (140-200)||(15851479-15851539)
[»] scaffold0363 (2 HSPs)
scaffold0363 (283-360)||(174-251)
scaffold0363 (307-346)||(280-319)
[»] chr8 (6 HSPs)
chr8 (283-360)||(14418467-14418544)
chr8 (305-360)||(13097022-13097077)
chr8 (305-363)||(41778930-41778988)
chr8 (314-360)||(41836420-41836466)
chr8 (307-346)||(14418399-14418438)
chr8 (283-352)||(12575466-12575535)
[»] scaffold0567 (1 HSPs)
scaffold0567 (305-360)||(5999-6054)
[»] scaffold0352 (2 HSPs)
scaffold0352 (142-200)||(2619-2677)
scaffold0352 (314-360)||(2801-2847)
[»] scaffold0440 (1 HSPs)
scaffold0440 (296-360)||(9865-9928)
[»] scaffold0264 (1 HSPs)
scaffold0264 (296-360)||(24363-24426)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 1838836 - 1838660
Alignment:
Q  20 atgaataccaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactaaattacaatctttcttagacaaaagatgaagat 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  1838836 atgaataccaacagcaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactgaattacaatctttcttagacaaaagctgaagat 1838737  T
Q  120 gaagatgaaaaggatgcgctaatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 202  Q
    ||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1838736 gaag------aggatgcgctaatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 1838660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 1838628 - 1838475
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaataaaagaataaaagttggttttaag 306  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1838628 tttatcaaaaaggatgtataaatttatattgatttttcctagacagttggattggtttttataaagtaaacgtaataaaagaataaaagttggttttaag 1838529  T
Q  307 aatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1838528 aatattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1838475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 14790771 - 14790620
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||  |||  |||| |||  ||||||||| ||||| |||||||||||||||| |    
T  14790771 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttca 14790675  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  14790674 gaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14790620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 14795799 - 14795648
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||  |||  |||| |||  ||||||||| ||||| |||||||||||||||| |    
T  14795799 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttca 14795703  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  14795702 gaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14795648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 20527296 - 20527407
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaat--aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaa 348  Q
    ||||| |||||||||| ||| |||||| |||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20527296 agttgaattgatttttgtaacgtaaacataaataaaaacaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccga 20527395  T
Q  349 agttctcctatg 360  Q
    ||||||||||||    
T  20527396 agttctcctatg 20527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 27649214 - 27649104
Alignment:
Q  251 agttggattgatttttataaagtaaacgta-ataaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| |||||||||  |||||||| || ||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||    
T  27649214 agttggattggtttttataacataaacgtagatgaaacaataaaagttggttttaagaaaattagagcgaagtatggttaagaccttcgaatcctccgaa 27649115  T
Q  350 gttctcctatg 360  Q
    |||||||||||    
T  27649114 gttctcctatg 27649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 32704418 - 32704498
Alignment:
Q  280 aataaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  32704418 aataaaacaataaaagttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 32704498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 19664799 - 19664909
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaataaaag-aataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| | ||| |||| |||||| | |||||  |||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||| ||    
T  19664799 agttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggtttaagaaaattagagagatgtatggttaagaccttcgaatcctccgaa 19664898  T
Q  350 gttctcctatg 360  Q
    |||||||||||    
T  19664899 gttctcctatg 19664909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 15535300 - 15535242
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  15535300 tgatggagatttcgcatgtgaaccaaaattatcgaagtaataaataaattcgtatccac 15535242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 241 - 360
Target Start/End: Complemental strand, 16883797 - 16883677
Alignment:
Q  241 ttccctagaaagttggattgatttttataaagtaaacgtaataaaag-aataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcg 338  Q
    ||||||||  ||||| |||||||||| |||  |||||| | |||||  |||||||| ||||||||| ||| |||||||||||||||||||||||| ||||    
T  16883797 ttccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacattcg 16883699  T
Q  339 aatcctccaaagttctcctatg 360  Q
    |||||| | |||||||||||||    
T  16883698 aatccttcgaagttctcctatg 16883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 19664667 - 19664724
Alignment:
Q  143 gatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  19664667 gataaagatttggcaagtgaaccaaaactatcgaagtaataaataaatttgtatccac 19664724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 1841701 - 1841591
Alignment:
Q  26 accaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactaa-attacaatctttcttagacaaaagatgaagatgaaga 124  Q
    ||||||||||  |||| |||||  || || |||||||||||| ||||||||||||||| ||| |  ||||||||||||| ||||||| || |||||||||    
T  1841701 accaacaacattgacaagctctgcataaatgcttttatacttaaaataactcaaaacagtaacacaacaatctttcttatacaaaagctggagatgaaga 1841602  T
Q  125 tgaaaaggatg 135  Q
    |||| ||||||    
T  1841601 tgaagaggatg 1841591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 15540809 - 15540765
Alignment:
Q  147 gagatttggcaagtgaaccaaaattatcgaagtaataaataaatt 191  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  15540809 gagatttggcaagtgaaccaaaactatcgaagtaataaataaatt 15540765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 30978396 - 30978455
Alignment:
Q  300 ttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||    
T  30978396 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctccaaagctctcctatg 30978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 27649347 - 27649300
Alignment:
Q  141 atgatagagatttggcaagtgaaccaaaattatcgaagtaataaataa 188  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  27649347 atgatagagatttggcaagtgaactaaaactatcgaagtaataaataa 27649300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 32427544 - 32427489
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatc 197  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  32427544 tgatagatatttggtaagtgaaccaaaactatcgaagtaataaataaatttgtatc 32427489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 13017387 - 13017433
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  13017387 gagagaagtatggttaagtccttcgaatcctccaaagctctcctatg 13017433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 6526733 - 6526810
Alignment:
Q  44 ctctcgatcaaagcttttatacttgaaataactcaaaacactaa-attacaatctttcttagacaaaagatgaagatg 120  Q
    ||||| ||||| || ||||||||| |||| |||||||||| ||| |||||||||||||||||||||||| || |||||    
T  6526733 ctctccatcaatgcgtttatacttaaaatcactcaaaacagtaacattacaatctttcttagacaaaagctgcagatg 6526810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 15540649 - 15540574
Alignment:
Q  283 aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctccta 358  Q
    |||| ||||||||||   ||| |||| |||| |||||  ||||||||||||||||||||||||| |||||||||||    
T  15540649 aaaacaataaaagtttagttttagaaaattaaagagatttatggttaagaccttcgaatcctccgaagttctccta 15540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 6528589 - 6528667
Alignment:
Q  50 atcaaagcttttatacttgaaataactcaaaacactaa----attacaatctttcttagacaaaagatgaagatgaaga 124  Q
    ||||| ||||||||||||||||| |||||||||| |||     ||||||||||||| ||| ||||| ||||||||||||    
T  6528589 atcaatgcttttatacttgaaatcactcaaaacagtaatattcttacaatctttctcagataaaagctgaagatgaaga 6528667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 22221789 - 22221726
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||| ||| |||||||| ||||||||| |||||||||||||| ||| |||||||||    
T  22221789 ttggtttttagaaaatt-gagagaagcatggttaagtccttcgaatcctccgaagctctcctatg 22221726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 22247624 - 22247561
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||| ||| |||||||| ||||||||| |||||||||||||| ||| |||||||||    
T  22247624 ttggtttttagaaaatt-gagagaagcatggttaagtccttcgaatcctccgaagctctcctatg 22247561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 12980686 - 12980736
Alignment:
Q  310 attagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| ||||||  ||||| |||||||||||||||||| |||||||||||||    
T  12980686 attaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 12980736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 12983573 - 12983623
Alignment:
Q  310 attagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| ||||||  ||||| |||||||||||||||||| |||||||||||||    
T  12983573 attaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 12983623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 32427413 - 32427303
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaataaaag-aataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| | ||| |||| |||||| | |||||  ||| |||||| | ||| |||| |||||||||| || || |||||||||| ||||||||  ||    
T  32427413 agttggattggtatttgtaaaataaacgaattaaaaacaatgaaagtttggttttagaaaattagagagatgtttgattaagacctttgaatcctctgaa 32427314  T
Q  350 gttctcctatg 360  Q
    |||||||||||    
T  32427313 gttctcctatg 32427303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 11183960 - 11184037
Alignment:
Q  241 ttccctagaaagttggattgatttttataaagtaaacgtaataaaag-aataaaagttggttttaagaatattagaga 317  Q
    ||||||||  |||||  ||||||||| |||  ||||||||||||||  |||||||||||||||| |||| ||||||||    
T  11183960 ttccctaggcagttgagttgatttttgtaacataaacgtaataaaaacaataaaagttggtttttagaaaattagaga 11184037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 15535135 - 15535058
Alignment:
Q  283 aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| |||||||||| | ||| | || |||| || || ||||||||||||||||| |||||||| ||||| |||||||    
T  15535135 aaaacaataaaagtttggttttacaaaattaaagtgatgtatggttaagaccttcaaatcctccgaagttttcctatg 15535058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 36843071 - 36843181
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  36843071 agttggattggtttttataaagtaaacgtaaataaaacaataaaagttggttttatgaatattagagagaagtatggttaagaccttcgaatcctccgaa 36843170  T
Q  350 gttctcctatg 360  Q
    |||||||||||    
T  36843171 gttctcctatg 36843181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 9765913 - 9765803
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  9765913 agttggattggtttttataaagtaaacataaataaaataataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctctgaa 9765814  T
Q  350 gttctcctatg 360  Q
    |||||||||||    
T  9765813 gttctcctatg 9765803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 6967300 - 6967149
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||  |||  |||| |||  ||||||||| ||||| |||||||||||||||| |    
T  6967300 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttca 6967204  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  6967203 gaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 6967149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 17866446 - 17866597
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||   ||  |||| |||  ||||||||| ||||| |||||||||||||||| |    
T  17866446 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagctg--ttttgtaacataaacgtaaataaaacaataaaagttggttttca 17866542  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  17866543 gaatattagagagaagtatggtttagaccttcgaatcctctgaagttctcctatg 17866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 24783561 - 24783410
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    |||||||||||||||||||||||||||||||||| |||  ||  |||||  |||  |||| |||  ||||| ||| ||||| ||||||||||||||||||    
T  24783561 tttatcaaaaaggatgtataaatttatattgattgtcca-aggcagttgagttg--ttttgtaacataaacttaaataaaacaataaaagttggttttaa 24783465  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  24783464 gaatattagagagaagtatggttaagacctttgaatcctccgaagttctcatatg 24783410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 17863258 - 17863338
Alignment:
Q  280 aataaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  17863258 aataaaacaataaaagttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 17863338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 36842937 - 36842997
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  36842937 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataagatcgaatccacaa 36842997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 24783654 - 24783596
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||    
T  24783654 tgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaatttgtatccac 24783596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 23313449 - 23313504
Alignment:
Q  305 agaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  23313449 agaaaattagagagaagtatggttaagacctttgaatcctccgaagttctcctatg 23313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 36222489 - 36222552
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||| ||| |||||||||||||||||| |||||||||||||| |||||||||||||    
T  36222489 ttggtttttagaagatt-gagagaagtatggttaagtccttcgaatcctccgaagttctcctatg 36222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 3862100 - 3862151
Alignment:
Q  310 attagagagaagtatggttaagaccttcgaatcctccaaagttctcctatgc 361  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||||||||    
T  3862100 attagagagaagtatgattaagaccttcgaatccttcgaagttctcctatgc 3862151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 23759806 - 23759852
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  23759806 gagagaagtatggttaagtccttcgaatcctccaaagctctcctatg 23759852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 46846479 - 46846556
Alignment:
Q  283 aaaagaataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| |||||||| |||||||| |||| ||| |||||||||||||||||| |||||||||||||| ||||||| |||||    
T  46846479 aaaacaataaaagattggtttttagaaaatt-gagagaagtatggttaagtccttcgaatcctccgaagttcttctatg 46846556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 294912 - 294866
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||    
T  294912 gagagaagtatggttaagtctttcgaatcctccgaagttctcctatg 294866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 9766046 - 9766000
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataa 188  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||||    
T  9766046 tgatagatatttggcaagttaaccaaaactatcgaagtaataaataa 9766000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 23108066 - 23107989
Alignment:
Q  283 aaaagaataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| |||||||| ||||||||| ||| ||||||||||| | ||||||||||||||||||| ||| ||| |||||||||    
T  23108066 aaaacaataaaagattggtttta-gaaaattagagagaaatgtggttaagaccttcgaatcatccgaagctctcctatg 23107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 11279565 - 11279496
Alignment:
Q  287 gaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcct 357  Q
    |||||||  |||||||| |||| ||| |||||||||||||||||| |||||||||| | | ||||||||||    
T  11279565 gaataaagattggtttttagaagatt-gagagaagtatggttaagtccttcgaatctttcgaagttctcct 11279496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 13496140 - 13495989
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    |||||||||||||||||||||||||||||||||| ||| |||  ||||| ||||  |||| |||  ||||||||| ||||| ||||||||||| ||||||    
T  13496140 tttatcaaaaaggatgtataaatttatattgattgtcc-taggcagttgaattg--ttttgtaacataaacgtaaataaaacaataaaagttgattttaa 13496044  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  13496043 gaatattagagagaagtatggttaagacctttgaatcctccgaagttctcctatg 13495989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 10765072 - 10764921
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||  |||  |||| |||  ||||||||| ||||| |||||||||||||||| |    
T  10765072 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttca 10764976  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  10764975 gaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 10764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 13493415 - 13493264
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||  |||  |||| |||  ||||||||| ||||| |||||||||||||||| |    
T  13493415 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttca 13493319  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  13493318 gaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 13493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 39546354 - 39546244
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| ||||| ||| ||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||    
T  39546354 agttggattggtttttgtaacgtaaacgcaaataaaacaataaaagttggttttaaaaatattagagagaagtatggttaagaccttcgaatcctccgaa 39546255  T
Q  350 gttctcctatg 360  Q
    |||||| ||||    
T  39546254 gttctcatatg 39546244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 27282241 - 27282351
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| ||||||||||||||| |||| ||||| ||| ||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||    
T  27282241 agttggattggtttttataaagtaaatgtaaataaaacaattaaaattggttttatgaatattagagagaagtatggttaagactttcgaattctccgaa 27282340  T
Q  350 gttctcctatg 360  Q
    |||||||||||    
T  27282341 gttctcctatg 27282351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 32506021 - 32506098
Alignment:
Q  283 aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||    
T  32506021 aaaacaataaaagttggttttaagaatattatagagaagtgtggttaagaccttcgaatcctccgaagttctcctatg 32506098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 34066456 - 34066346
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaataaaag-aataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaa 348  Q
    ||||| |||||||||| |||  |||||| | |||||  |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |    
T  34066456 agttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagaccttcgaatcctccga 34066358  T
Q  349 agttctcctatg 360  Q
    ||||||||||||    
T  34066357 agttctcctatg 34066346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 13496232 - 13496174
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  13496232 tgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 13496174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 1936691 - 1936628
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1936691 ttggtttta-gaaaattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1936628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 16190345 - 16190421
Alignment:
Q  283 aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| ||||||  ||||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  16190345 aaaacaataaagattggtttta-gaaaattaaagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 16190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 39546486 - 39546431
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatc 197  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  39546486 tgatagagatttggcaagtgaaccaaaattattgaagtaataaataagatcgtatc 39546431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 16190179 - 16190237
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    |||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||    
T  16190179 tgatggagatttgacaagtgaatcaaaactatcgaagtaataaataaattcgtatccac 16190237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 32505857 - 32505915
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  32505857 tgatagatatttggcaagtgaaccaaaactatcgaagtaataaataagatcgtatccac 32505915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 239
Target Start/End: Original strand, 32505953 - 32505985
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgat 239  Q
    |||||||||||||||||||||||||||||||||    
T  32505953 tttatcaaaaaggatgtataaatttatattgat 32505985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 22456686 - 22456736
Alignment:
Q  310 attagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| ||||||  ||||| |||||||||||||||||| |||||||||||||    
T  22456686 attaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 22456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Complemental strand, 35231251 - 35231149
Alignment:
Q  26 accaacaacaccgacaggctctcgatcaaagcttttatacttgaaataactcaaaacactaa----attacaatctttcttagacaaaagatgaagatga 121  Q
    |||||||||||| ||| | || | ||||| |||||||||||| |||| | |||||||| |||    ||||||||| |||| ||| ||||| |||||||||    
T  35231251 accaacaacaccaacaagttcactatcaatgcttttatacttaaaatcattcaaaacagtaacattattacaatcattctcagataaaagctgaagatga 35231152  T
Q  122 aga 124  Q
    |||    
T  35231151 aga 35231149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 49147936 - 49147899
Alignment:
Q  323 atggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  49147936 atggtcaagaccttcgaatcctccgaagttctcctatg 49147899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 14616521 - 14616672
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||| ||||||||||||||  |||||| ||||||  |||  |||| |||  ||||||||| ||||| ||||||||||| ||||||    
T  14616521 tttatcaaaaaggatgtatgaatttatattgatta-ccctaggaagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttgattttaa 14616617  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  14616618 gaatattagagagaagtatggttaagacctttgaatcctccgaagttctcctatg 14616672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 22159856 - 22159746
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||    
T  22159856 agttggattggtttttataaagtaaacgtaaataaaacaataaaaattggttttaagaatattagagagaaatatggttaagacctttgaatcctccgaa 22159757  T
Q  350 gttctcctatg 360  Q
    |||||||||||    
T  22159756 gttctcctatg 22159746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 360
Target Start/End: Complemental strand, 34406001 - 34405850
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||  |||  || | |||  ||||||||| ||||| |||||||||||||||| |    
T  34406001 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagttg--ttgtgtaacataaacgtaaataaaacaataaaagttggttttca 34405905  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  34405904 gaatattagagagaagtatggttaagaccttcaaatcctctgaagttctcctatg 34405850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 7650034 - 7650185
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  |||||  |||  |||| |||  ||||||||| ||||| ||||||||||| ||||||    
T  7650034 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcagttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttgcttttaa 7650130  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||||||||||||| || ||||||| | ||||||| |||||    
T  7650131 gaatattagagagaagtatggttaagacatttgaatcctacgaagttcttctatg 7650185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 14616428 - 14616487
Alignment:
Q  141 atgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14616428 atgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 14616487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 7649938 - 7649996
Alignment:
Q  138 ctaatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtat 196  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  7649938 ctaatgatagagatttgacaagtgaaccaaaactatcgaagtaataaataaattcgtat 7649996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 11989054 - 11989108
Alignment:
Q  305 agaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctat 359  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11989054 agaaaattagagagaagtaaggttaagaccttcgaatcctccaaagttctcctat 11989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 33575154 - 33575091
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||| ||| |||||||||||||||||| |||||||||||||| ||| |||||||||    
T  33575154 ttggtttttagaaaatt-gagagaagtatggttaagtccttcgaatcctccgaagctctcctatg 33575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 15532385 - 15532441
Alignment:
Q  300 ttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcct 357  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||| |||| ||||||    
T  15532385 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagctctcct 15532441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 357
Target Start/End: Original strand, 15542567 - 15542623
Alignment:
Q  300 ttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcct 357  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||| |||| ||||||    
T  15542567 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagctctcct 15542623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 13979598 - 13979488
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaa 349  Q
    |||||||||| |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  13979598 agttggattggttttaataaagtaaacgtaaataaaacaataaaagttggttttaagaatattagagagaagtatggttaagacctttgaatcctccgaa 13979499  T
Q  350 gttctcctatg 360  Q
    | |||||||||    
T  13979498 gctctcctatg 13979488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 13979730 - 13979672
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  13979730 tgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaaatcgaatccac 13979672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 46731699 - 46731641
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||    
T  46731699 tgatagagatttggcaagtgaacaaaaactatcgaagtaatgaataaatttgtatccac 46731641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 11138766 - 11138812
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  11138766 gagagaagtatggttaagtccttcgaatcctccaaagctctcctatg 11138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 22626508 - 22626554
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  22626508 gagagaagtatggttaagtccttcgaatcctccaaagctctcctatg 22626554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 46731559 - 46731496
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||| ||| |||||||||| ||| |||||||||||||||||||||| |||||||| ||||    
T  46731559 ttggtttta-gaaaattagagagatgtaaggttaagaccttcgaatcctccgaagttctcatatg 46731496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 26822039 - 26822099
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccacaa 202  Q
    |||||||  ||||| ||||| ||||||| ||||||||||||||  ||||||||||||||||    
T  26822039 tgatagacttttggaaagtgtaccaaaactatcgaagtaataataaaattcgtatccacaa 26822099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 3306213 - 3306153
Alignment:
Q  142 tgatagagatttggcaagtgaaccaa-aattatcgaagtaataaa-taaattcgtatccac 200  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||| ||| |||||||||||    
T  3306213 tgatagatatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccac 3306153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 30157797 - 30157857
Alignment:
Q  142 tgatagagatttggcaagtgaaccaa-aattatcgaagtaataaa-taaattcgtatccac 200  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||| ||| |||||||||||    
T  30157797 tgatagaaatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccac 30157857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 32575819 - 32575930
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaagaatattagaga--gaagtatggttaagaccttcgaatcctcca 347  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||     
T  32575819 agttggattg-tttttataaagtaaacgtaaataaaacaataaaagttggttttaagaatattagagaaagaagtatggttaagaccttcgaatcctccg 32575917  T
Q  348 aagttctcctatg 360  Q
    ||| |||||||||    
T  32575918 aagctctcctatg 32575930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 23673345 - 23673403
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23673345 tgatagagatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 23673403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 36327172 - 36327113
Alignment:
Q  141 atgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36327172 atgatagatatttggcaagtgaaccaaaactatcgaagtaataaataaattcgtatccac 36327113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 23673511 - 23673588
Alignment:
Q  283 aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| |||||||||| | ||| |||| |||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  23673511 aaaacaataaaagtttggttttagaaaattagagagatgtatggttaagaccttcgaatcctccgaagttctcctatg 23673588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 16295145 - 16295097
Alignment:
Q  140 aatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataa 188  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16295145 aatgatagagatttggcaagtgaaccaaaactatcgaagtaataaataa 16295097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 32575685 - 32575743
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||||| |||||||||||||||||| | ||| ||||||||||||||||||||||||||    
T  32575685 tgatagatatttggcaagtgaaccaacactattgaagtaataaataaattcgtatccac 32575743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 360
Target Start/End: Complemental strand, 36327046 - 36326928
Alignment:
Q  243 ccctagaaagttggattgatttttataaagtaaacgtaataaaag-aataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaat 341  Q
    |||||| ||||| ||||| | ||| |||| |||||| | |||||  |||||||||| | ||| |||| |||||||||| |||||||||||||||| ||||    
T  36327046 ccctaggaagttagattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagagagatgtatggttaagacctttgaat 36326947  T
Q  342 cctccaaagttctcctatg 360  Q
    ||||| |||||||| ||||    
T  36326946 cctccgaagttctcatatg 36326928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 16294946 - 16294900
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||    
T  16294946 gagagaagtatggttaagtccttcgaatcctccgaagttctcctatg 16294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 40018040 - 40017981
Alignment:
Q  301 tttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| | | ||||||||||||||||||||||||||||||||| ||  |||||||||    
T  40018040 tttaagaaaaattgagagaagtatggttaagaccttcgaatcctccgaaactctcctatg 40017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 24384925 - 24384981
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaa--taaattcgtat 196  Q
    ||||||| |||||||||||| ||||||| |||||||||||||||  |||||||||||    
T  24384925 tgatagatatttggcaagtgtaccaaaactatcgaagtaataaaattaaattcgtat 24384981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 31528450 - 31528394
Alignment:
Q  300 ttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcct 357  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||||| |||| ||||||    
T  31528450 ttttaagaaaatt-gagagaagtatggttaagtccttcgaatcctctaaagctctcct 31528394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 32074156 - 32074216
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaata--aataaattcgtatccac 200  Q
    ||||||| ||||| |||||  |||||||||||||||||||||  |||||||| ||||||||    
T  32074156 tgatagatatttgacaagtataccaaaattatcgaagtaataataataaatttgtatccac 32074216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 342
Target Start/End: Complemental strand, 13710150 - 13710091
Alignment:
Q  283 aaaagaataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatc 342  Q
    |||| |||||||| ||||||||| ||| ||| |||||||||||||||||||||||| ||||    
T  13710150 aaaacaataaaagattggtttta-gaaaatttgagagaagtatggttaagaccttcaaatc 13710091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 207 - 360
Target Start/End: Original strand, 647296 - 647447
Alignment:
Q  207 tttatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaa 305  Q
    ||||||||||||||||||||||||||||||||||  ||||||  | |||  |||  |||| |||  ||||||||| ||||| |||||||||||||||| |    
T  647296 tttatcaaaaaggatgtataaatttatattgattg-ccctaggcatttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttca 647392  T
Q  306 gaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||| ||||||||||||  |||||||||||||    
T  647393 gaatattagagagaagtatggttaagatcttcgaatcctctgaagttctcctatg 647447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 360
Target Start/End: Original strand, 650570 - 650719
Alignment:
Q  209 tatcaaaaaggatgtataaatttatattgattttccctagaaagttggattgatttttataaagtaaacgtaa-taaaagaataaaagttggttttaaga 307  Q
    ||||||||||||||||||||||||||||||||  ||||||  | |||  |||  |||| |||  ||||||||| ||||| |||||||||||||||| | |    
T  650570 tatcaaaaaggatgtataaatttatattgattg-ccctaggcatttgagttg--ttttgtaacataaacgtaaataaaacaataaaagttggttttcata 650666  T
Q  308 atattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  650667 atattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 650719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 26062690 - 26062748
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  26062690 tgataaagatttggcaagtgaaccaaaactatcgaaataataaataaattcgtatccac 26062748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 11649431 - 11649477
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||    
T  11649431 gagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 11649477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 26060635 - 26060589
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||    
T  26060635 gagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 26060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 360
Target Start/End: Original strand, 26062825 - 26062937
Alignment:
Q  251 agttggattgatttttataaagtaaacgtaataaaag-aataaaagttggttttaagaatattagagagaa--gtatggttaagaccttcgaatcctcca 347  Q
    |||||||||| | ||| |||| |||||| | |||||  |||||||||| | ||| |||| ||||||||||   |||||||||||||||| |||||||||     
T  26062825 agttggattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagagagagatgtatggttaagacctttgaatcctccg 26062924  T
Q  348 aagttctcctatg 360  Q
    |||||||||||||    
T  26062925 aagttctcctatg 26062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 15851539 - 15851479
Alignment:
Q  140 aatgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||   || |||||||||||    
T  15851539 aatgataaagatttggcaagtgtaccaaaactatcgaagtaatagtaaagttcgtatccac 15851479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 174 - 251
Alignment:
Q  283 aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  174 aaaacaataaaagttggttttaagaatattagagagaagtatggttaagacattcgaatcctccgaatttctcctatg 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 346
Target Start/End: Original strand, 280 - 319
Alignment:
Q  307 aatattagagagaagtatggttaagaccttcgaatcctcc 346  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  280 aatattagagagaagtatggttaagacattcgaatcctcc 319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 14418544 - 14418467
Alignment:
Q  283 aaaagaataaaagttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  14418544 aaaacaataaaagttggttttaagaatattagagagaagtatggttaagacattcgaatcctccgaatttctcctatg 14418467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 360
Target Start/End: Complemental strand, 13097077 - 13097022
Alignment:
Q  305 agaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  13097077 agaaaattagagagaagtatggttaagaccttcgaatcctccgaagttatcctatg 13097022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 41778930 - 41778988
Alignment:
Q  305 agaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatgcta 363  Q
    |||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  41778930 agaagattaaagagaagtatggttaagaccttcaaatcttccgaagttctcctatgcta 41778988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 41836420 - 41836466
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||    
T  41836420 gagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 41836466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 346
Target Start/End: Complemental strand, 14418438 - 14418399
Alignment:
Q  307 aatattagagagaagtatggttaagaccttcgaatcctcc 346  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  14418438 aatattagagagaagtatggttaagacattcgaatcctcc 14418399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 12575466 - 12575535
Alignment:
Q  283 aaaagaataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagtt 352  Q
    |||| |||||||| ||||||||| ||| ||||||||||||||||||||||||| | ||||||||| |||||    
T  12575466 aaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagaccattgaatcctccgaagtt 12575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 360
Target Start/End: Original strand, 5999 - 6054
Alignment:
Q  305 agaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  5999 agaaaattagagagaagtatggttaagaccttcgaatcctccgaggttctcctatg 6054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 2619 - 2677
Alignment:
Q  142 tgatagagatttggcaagtgaaccaaaattatcgaagtaataaataaattcgtatccac 200  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||    
T  2619 tgatggagatttggcaagtggaccaaaactatcgaagtaataaataagatcgtatccac 2677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 2801 - 2847
Alignment:
Q  314 gagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    ||||||||||| ||||||||||| ||||||||| ||| |||||||||    
T  2801 gagagaagtatcgttaagacctttgaatcctccgaagctctcctatg 2847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 360
Target Start/End: Complemental strand, 9928 - 9865
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||| ||| |||||||||||||||||| |||||||||||||| ||| |||||||||    
T  9928 ttggtttttagaaaatt-gagagaagtatggttaagtccttcgaatcctccgaagctctcctatg 9865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 24363 - 24426
Alignment:
Q  296 ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccaaagttctcctatg 360  Q
    |||||||| |||| ||| |||||||| ||||||||| |||||||||||||| ||| |||||||||    
T  24363 ttggtttttagaaaatt-gagagaagcatggttaagtccttcgaatcctccgaagctctcctatg 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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