View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_38 (Length: 367)
Name: NF19906_low_38
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 48442179 - 48441823
Alignment:
| Q |
1 |
tacttgcccattcagaattgggtacttccattttagacgtctaggctatataggtactctcccttttagaatgcaatgttattcgtaagacctatttcct |
100 |
Q |
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| T |
48442179 |
tacttgcccattaagaattgggtacttccattttagacgtctaggctatataggtactctcccttttagaatgcaatgttattcgtaagacctatttcgt |
48442080 |
T |
|
| Q |
101 |
aannnnnnnn--gaggtgctagcttgaagggataaagtgcaaacatattaggcactgaattgaaaacgtggatgttagtgttgtatacacatgagaacca |
198 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48442079 |
aattttttttttgaggtgctagcttgaagggataaagtgcaaacatattaggcactgaattgaaaacgtggatgttagtgttgtatacacatgagaacca |
48441980 |
T |
|
| Q |
199 |
ctttaagtaccaaaatatgagttgctccttcaaggatgtttttaaaattttgtggagccttgttctttgtcatgttattagccgaattggagtacacact |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48441979 |
ctttaagtaccaaaatatgagttgctccttcaaggatgtttttaaaattttgtggagccttgttctttgtcatgttattagccgaattggagtacatact |
48441880 |
T |
|
| Q |
299 |
ccttttgttcattctttgaggatatnnnnnnngagacatgcatgatcataggatatt |
355 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48441879 |
ccttttgttcattctttgaggatataaaaaaagagacatgcatgatcataggatatt |
48441823 |
T |
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