View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_43 (Length: 345)
Name: NF19906_low_43
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 41975206 - 41975013
Alignment:
| Q |
18 |
tcttccacataaaaatgttatttcattgacgtggttcgtcattgaaagactttcactcaacaattcacacatgtctaaaacaatcgaggaagctgttttt |
117 |
Q |
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| T |
41975206 |
tcttccacataaaaatgttatttcattgacgtggttcgtcattgaaagactttcactcaacaattcaaacatgtctaaaacaatcgaggaagctgttttt |
41975107 |
T |
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| Q |
118 |
catgctaaaagatggagggaggtatgaaagaaagagatgcaaacatcggggctaagtctaaaaacatgttggacacacaaattgattcttcatt |
211 |
Q |
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| T |
41975106 |
catgctaaaagatggagggaggtatgaaagaaagagatgcaaacatcggggctaagtctaaaaacatgttggacacacaaattgattcttcatt |
41975013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 197 - 334
Target Start/End: Complemental strand, 41975003 - 41974866
Alignment:
| Q |
197 |
aattgattcttcattggaaatggaggaaactgtaagtagaatttggaaattaggcttccatcttattactcagatttagcatgtaaaaagtggttcaaca |
296 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41975003 |
aattgattcttcattggaaatggaggaacctgtcagtagaatttggaaattaggcttccatcttattactcagatttagcatgtaaaaagtggttcaaca |
41974904 |
T |
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| Q |
297 |
atacgaatgcatatgggtcatgtttcaattagcttcat |
334 |
Q |
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| T |
41974903 |
atacgaatgcatatgggtcatgtttcaattagcttcat |
41974866 |
T |
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