View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_5 (Length: 615)
Name: NF19906_low_5
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 8003398 - 8003714
Alignment:
| Q |
12 |
aacctgtgtggaaaaggcttgagagacgataaatctttgctttcgtatgtaatgaatcttagtttagtttccaattttcattctacgagttattagttag |
111 |
Q |
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| T |
8003398 |
aacctgtgtggaaaaggcttgagagacgataaatctttgctttcgtatgtaatgaatcttagtttagtttccaattttcattctacgagttattagttag |
8003497 |
T |
|
| Q |
112 |
gtaagaattcaatctatttacattaataagagaaatttgaacgtgagtattcttattagaacaatatattttctatcgtttgtaacgtgcaatcaccggt |
211 |
Q |
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| T |
8003498 |
gtaagaattcaatctatttacattaataagagaaatttgaacgtgagtattcttattagaacaatatattttctatcgtttgtaacgtgcaatcaccggt |
8003597 |
T |
|
| Q |
212 |
gataaattacctctacttgtactattgctgcatttgagtaaaagatctatattttgatccaaactcaaccacataataagtttgatattcagtctcaata |
311 |
Q |
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| T |
8003598 |
gataaagtacctctacttgtactattgctgcatttgagtaaaatatctatattttgatccaaattcaaccacataataagtttgatattcagtctcaata |
8003697 |
T |
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| Q |
312 |
tgttacccagtgtttgt |
328 |
Q |
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| T |
8003698 |
tgttacccagtgtttgt |
8003714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 393 - 598
Target Start/End: Original strand, 8003779 - 8003984
Alignment:
| Q |
393 |
cttaataacaaaattatctataaaacgttgtaatattgtatgagnnnnnnnnncaagttaactattatatacgagattaggaatgnnnnnnngttgagat |
492 |
Q |
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| T |
8003779 |
cttaataacaaaattatctataaaacgttgtaatattgtatgagaaaaaaaaacaagttaactattctatacgagattagaaatgaaaaaaagttgagat |
8003878 |
T |
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| Q |
493 |
aactccaattatagaaaaaatgatggtcttaattatagacttctccaaatgtgttgtatgtataagaaaaaatgactatacagtgaaagatataggacct |
592 |
Q |
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| T |
8003879 |
aactccaattatagaaaaaatgatggtcttaattatagacttctccaaatgtgttgtatgtaaaagaaaaaatgactatacagtgaaagatataggacct |
8003978 |
T |
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| Q |
593 |
taagtt |
598 |
Q |
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|||||| |
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| T |
8003979 |
taagtt |
8003984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 49773808 - 49773642
Alignment:
| Q |
12 |
aacctgtgtggaaaaggcttgagagacgataaatctttgctttcgtatgtaatgaatcttagtttagtttccaattttcattctacgagttattagttag |
111 |
Q |
| |
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||||||||||| || |||||||||||| |||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49773808 |
aacctgtgtgggaa-ggcttgagagactataaatctttccattcgtatgtaattaatcttggtttagtttccaattttcattctacgagttattagttag |
49773710 |
T |
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| Q |
112 |
gtaagaattcaatctatttacattaataagagaaatttgaacgtgagtattcttattagaacaatatattttctatcgttt |
192 |
Q |
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| T |
49773709 |
gttcgggttcaatctatttac-------------attcgaacgtgagtattcttgttagaagaatatattttctatcgttt |
49773642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 393 - 598
Target Start/End: Complemental strand, 49773535 - 49773321
Alignment:
| Q |
393 |
cttaataacaaaattatctataaaacgttgtaatattgtatgagnnnnnnnnn-caagttaactattatatacgagattaggaatgnnnnnnngttgaga |
491 |
Q |
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| T |
49773535 |
cttaataacaaaattatctataaaatgttttaatattgtatgagaaaaaaaaaacaagttaattattctatacgagattaggaatgaaaaa--gttgagg |
49773438 |
T |
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| Q |
492 |
taactccaattatagaaaaaatgatggtcttaatt------at----agacttctccaaatgtgttgtatgtataagaaaaaatgactatacagtgaaag |
581 |
Q |
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|||||||||||||||||||||| | |||||||||| || ||||||| ||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
49773437 |
taactccaattatagaaaaaataacggtcttaatttaagttattttaagacttccccaaatgtgttgtatctaaaagaaaaaatgactatacagtgaaag |
49773338 |
T |
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| Q |
582 |
atataggaccttaagtt |
598 |
Q |
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||||||||||||||||| |
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| T |
49773337 |
atataggaccttaagtt |
49773321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 49773630 - 49773573
Alignment:
| Q |
256 |
atctatattttgatccaaactcaaccacataataagtttgatattcagtctcaatatg |
313 |
Q |
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||||||||||||| ||||| ||||||| ||| ||||||||||||||| || |||||| |
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| T |
49773630 |
atctatattttgacccaaaatcaaccaagtaacaagtttgatattcagacttaatatg |
49773573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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