View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_51 (Length: 298)
Name: NF19906_low_51
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 42874552 - 42874820
Alignment:
| Q |
18 |
caatcaaagatacacaaattttggttcattctttccttatcatagctcttgggaacaaaagtgactccttgttcatatagccatcttaaagaaatttgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
42874552 |
caatcaaagatacacaaattttggttcattctctccttatcataactcttgggaacaaaagtgactccttgttcatataaccatcttagagaaatttgtg |
42874651 |
T |
|
| Q |
118 |
caacagactttccatgtgcatctgcaatctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42874652 |
caacagactttccatgtgcatctgcaatctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgc |
42874751 |
T |
|
| Q |
218 |
agttaacactattccgtttgcgttgcaaaactctctaagcttcttttgttgccatgcaaggttcatctc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42874752 |
agttaacactattccgtttgcgttgcaaaactctctaagcttcttttgttgccatgcaaggttcatctc |
42874820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 42883683 - 42883951
Alignment:
| Q |
18 |
caatcaaagatacacaaattttggttcattctttccttatcatagctcttgggaacaaaagtgactccttgttcatatagccatcttaaagaaatttgtg |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
42883683 |
caatcaaagatacacaaattttggttcattctctccttatcataactcttgggaacaaaagtgactccttgttcatataaccatcttagagaaatttgtg |
42883782 |
T |
|
| Q |
118 |
caacagactttccatgtgcatctgcaatctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42883783 |
caacagactttccatgtgcatctgcaatctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgc |
42883882 |
T |
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| Q |
218 |
agttaacactattccgtttgcgttgcaaaactctctaagcttcttttgttgccatgcaaggttcatctc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42883883 |
agttaacactattccgtttgcgttgcaaaactctctaagcttcttttgttgccatgcaaggttcatctc |
42883951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 42890749 - 42890481
Alignment:
| Q |
18 |
caatcaaagatacacaaattttggttcattctttccttatcatagctcttgggaacaaaagtgactccttgttcatatagccatcttaaagaaatttgtg |
117 |
Q |
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|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
42890749 |
caatcaaagatacacaaattttggttcattctctccttatcataactcttgggaacaaaagtgactccttgttcatataaccatcttagagaaatttgtg |
42890650 |
T |
|
| Q |
118 |
caacagactttccatgtgcatctgcaatctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890649 |
caacagactttccatgtgcatctgcaatctctttaagcatatcattctccataacttcatttggtcctctgcttgcacctttcctcaatggtgaaaatgc |
42890550 |
T |
|
| Q |
218 |
agttaacactattccgtttgcgttgcaaaactctctaagcttcttttgttgccatgcaaggttcatctc |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890549 |
agttaacactattccgtttgcgttgcaaaactctctaagcttcttttgttgccatgcaaggttcatctc |
42890481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 37504124 - 37504208
Alignment:
| Q |
18 |
caatcaaagatacacaaattttggttcattctttccttatcatagctcttgggaacaaaagtgactccttgttcatatagccatc |
102 |
Q |
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||||||||||| ||| ||||||||||| || ||||| ||||||||||| |||||||| | |||||| ||||||||||||| |
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| T |
37504124 |
caatcaaagatttgcaagttttggttcatcctctccttgtcatagctcttaaccacaaaagtcaatccttgctcatatagccatc |
37504208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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