View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_52 (Length: 296)
Name: NF19906_low_52
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28395199 - 28395368
Alignment:
| Q |
1 |
agaaaataatacatatgaaccaacaacatggcaaattatatttgaaca---acatgacttaatgagtggaaactacacactacaacttgccttggccagt |
97 |
Q |
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| T |
28395199 |
agaaaataatacatatgaaccaacaacatggcaaattatatttgaacatcaacatgacttaaagagtggaaactacacactacaacttgccttggccagt |
28395298 |
T |
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| Q |
98 |
gctgctgatgcttacctacaggtacatcattaccnnnnnnnnaatcaatttagttttcgcaacgcttgag |
167 |
Q |
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| T |
28395299 |
gctgctgatgcttacctacaggtacatcattaccttttttttaatcaatttagttttcgcaacgcttgag |
28395368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 160 - 296
Target Start/End: Original strand, 28395735 - 28395869
Alignment:
| Q |
160 |
cgcttgagttaaatattcaatcgcattagttattaggtttttatattagatctaactcgttgttttaaaacctgcttataagacgaagatagtctctatt |
259 |
Q |
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| T |
28395735 |
cgcttgagttaaatattcaatcgcattagttattaggtttttatattagatctaactcgttgttttaaaacctgcttataagacgaagatagtctctatt |
28395834 |
T |
|
| Q |
260 |
tgtaaaatctaatcaaaccgtgtgtcttttttcaggt |
296 |
Q |
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| T |
28395835 |
tgtaaaatctaatcaaacc--gtatcttttttcaggt |
28395869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 28386876 - 28387002
Alignment:
| Q |
5 |
aataatacatatgaaccaacaacatggcaaattatatttgaaca---acatgacttaatgagtggaaactacacactacaacttgccttggccagtgctg |
101 |
Q |
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| T |
28386876 |
aataaaacatatgaaccaacaacatggcaaattatatttgaacatgaacaagacataatcagtggaaactacacactgcaactggccttggctagtgctg |
28386975 |
T |
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| Q |
102 |
ctgatgcttacctacaggtacatcatt |
128 |
Q |
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| T |
28386976 |
ccgatgctgacctacaggtacatcatt |
28387002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 28408917 - 28408790
Alignment:
| Q |
4 |
aaataatacatatgaaccaacaacatggcaaattatatttgaaca---acatgacttaatgagtggaaactacacactacaacttgccttggccagtgct |
100 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||| | ||||| |||| ||||||||||||||||| ||||| ||||| || |||||| |
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| T |
28408917 |
aaataaaacatatgaaccaacaacatggcagattatatttgaacataaaaatgacataatcagtggaaactacacacttcaactggccttagctagtgct |
28408818 |
T |
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| Q |
101 |
gctgatgcttacctacaggtacatcatt |
128 |
Q |
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|||||| || ||||||||| || ||||| |
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| T |
28408817 |
gctgattctaacctacaggcacgtcatt |
28408790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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