View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_54 (Length: 289)
Name: NF19906_low_54
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_54 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: scaffold0227 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 18570 - 18829
Alignment:
| Q |
12 |
attattcttaaaggttagcttgcaattcagctcttcaatacgatttgtaaattcatccattctatcgttgagggcagaaatctgttctgaaagctgacta |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18570 |
attattcttaaaggttagcttgcaattcagctcttcaatacgatttgtaaattcatccattctatcgttgagggcggaaatctgttctgaaagctgacta |
18669 |
T |
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| Q |
112 |
atggctccctacaacacaagtgatgatttaagttcagtacagttacatgaaataagaattattgcaagtgattggaattacctgatttacttgtgttgtc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18670 |
atggctccctacaacacaagtgatgatttaagttcaatacagttacatgaaataagaattattgcaagtgattggaattacctgatttacttgtgttgtc |
18769 |
T |
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| Q |
212 |
gaggaatctgaatttctttcaccaaacccccgattgttggaaaaatatccattaactttg |
271 |
Q |
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| T |
18770 |
gaggaatctgaatttctttcaccaaacccccgattgttggaaaaatatccattaactttg |
18829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 271
Target Start/End: Complemental strand, 28078202 - 28077941
Alignment:
| Q |
12 |
attattcttaaaggttagcttgcaattcagctcttcaatacgatttgtaaattcatccattctatcgttgagggcagaaatctgttctgaaagctgacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28078202 |
attattcttaaaggttagcttgcaattcagctcttcaatacgatttgtaaattcatccattctatcattgagggcagaaatctgttctgaaagctgacta |
28078103 |
T |
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| Q |
112 |
atggctccctacaacaca--agtgatgatttaagttcagtacagttacatgaaataagaattattgcaagtgattggaattacctgatttacttgtgttg |
209 |
Q |
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|| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| |
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| T |
28078102 |
atagctccctacaacacagaagtgatgatttaagttcagtacaattacatgaaataagagttattgcaagtgattggaattaccttatttactagtgttg |
28078003 |
T |
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| Q |
210 |
tcgaggaatctgaatttctttcaccaaacccccgattgttggaaaaatatccattaactttg |
271 |
Q |
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| T |
28078002 |
ttgaggaatctgaatttctttccccaaaaccccgattgttggaaaaatatccattaactttg |
28077941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 29539524 - 29539484
Alignment:
| Q |
37 |
ttcagctcttcaatacgatttgtaaattcatccattctatc |
77 |
Q |
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| T |
29539524 |
ttcagctcttcaatacgatttgtaaactcgcccattctatc |
29539484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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