View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_56 (Length: 282)
Name: NF19906_low_56
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 33089589 - 33089850
Alignment:
| Q |
18 |
ggttcttaaatgatcaacaaaaaatttcaaccaggcaaaatgcttctttgttgcttaaggaaatgaatgttgagtcattggcaaaaattgaagggattgt |
117 |
Q |
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| T |
33089589 |
ggttcttaaatgatcaacaaaaaatttcaaccaggcaaaatgcttctttgttgcttaaggaaatgaatgttgagtcattggcaaaaattgaagggattgt |
33089688 |
T |
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| Q |
118 |
tgaatctttggtcaacatggttaaggttaatgttgagattgggagtgcttctacaaaagcatgtttatcaacaatttttcatttggtttactcatcaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33089689 |
tgaatctttggtcaacatggttaaggttaatgttgagattgggagtgcttctacaaaagcatgtttatcaacaatttttcatttggtttactcatcaaag |
33089788 |
T |
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| Q |
218 |
agtaaaaaagtgattttggagaggtttgttgaattgggtttggtttcaattttcttcgagat |
279 |
Q |
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| T |
33089789 |
agtaaaaaagtgattttggagaggtttgttgaattgggtttggtttcaattttattggagat |
33089850 |
T |
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