View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_58 (Length: 281)
Name: NF19906_low_58
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 41996978 - 41997253
Alignment:
| Q |
13 |
aatatgcttcctaaaattaacattaatcaagaaaattaaactttaaatcgtgaatgcaacttcaatatgatgataataactcatactcataacaagataa |
112 |
Q |
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| T |
41996978 |
aatatgctccctaaaattaacattaatcaagaaaattaaactttaaatagtgaatgcaacttcaatatgatgataataactcatactcataacaaaataa |
41997077 |
T |
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| Q |
113 |
ttat-----------------gtttaattatggcaaggaagattttcatactttgctatatacagcataagtgtgttccatactttgctaaataatggtt |
195 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41997078 |
ttatagcaagggttaaataatgtttaattatggcaaggaagattttcatactttgctatatacagcataagtgtgttccatacttt-ctaaataatggtt |
41997176 |
T |
|
| Q |
196 |
aaataatgtttaaagggttgcaatagatgtttaccctaatttttaattcgagcaatccatcaaacgacctaagaagt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41997177 |
aaataatgtttaaagggttgcaatagatgtttaccctaatttttaagtcgagcaatccatcaaacgacctaagaagt |
41997253 |
T |
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