View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_6 (Length: 578)
Name: NF19906_low_6
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Original strand, 17125505 - 17126066
Alignment:
| Q |
1 |
aagaatcacttgatcacatcctccaatttccttttgatgttcaatttgtatagacttcagttcagttccactatcttgatgcagtgagtgttctaaattc |
100 |
Q |
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| T |
17125505 |
aagaatcacatgatcacatcctccaatttccttttgatgttcaatttgtatagacttcagttcagttccactatcttgatgcagtgagtgttctaaattc |
17125604 |
T |
|
| Q |
101 |
tcaccagtacaatgaggcagagtagttgatcctgtactgtgttcagaactttctggagagtcttcataaaattccatatacctattatacattcagaagc |
200 |
Q |
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| T |
17125605 |
tcaccagtacaatgaggcagagtagttgatcctgtactgtgttcagaactttctggagagtcttcataaaattccatatacctattatacattcagaagc |
17125704 |
T |
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| Q |
201 |
tattagattattccgtatccatcgtggaagttattctattttcaaattcaatgaacataaagtacctccaacatggctcaatttcttcactattattctt |
300 |
Q |
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| T |
17125705 |
tattagattattccgtatccatcgtggaagttattctattttcaaattcaatgaacataaagtacctccaacatggctcaatttcttcactattattctt |
17125804 |
T |
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| Q |
301 |
caagtcttccaataaatctttaagatctacaagttgtaaatctggaatcttatatccagaaacatctgattctttgtttcggttcataaactcttgaaga |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17125805 |
caagtcttgcaataaatctttaagatctacaagttgtaaatctggaatcttatatccagaaacatctgattctttgtttcggttcataaactcttgaaga |
17125904 |
T |
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| Q |
401 |
atctggcataaatacataggtttggcacattaaaagttggtttagtttttcagatgttgaacttcttgacatgtattctatactttggtttttgtatttc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17125905 |
atctggcataaatacataggtttggcacattaaaagttggtttagtttttcagatgttgaacttcttgacatgtattctatactttggtttttgtatttc |
17126004 |
T |
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| Q |
501 |
aatcaaatctcaccttccatgcattttcaagactttggtccatgttctctgcatcaactttt |
562 |
Q |
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| T |
17126005 |
aatcaaatctcaccttccatgcattttcaagactttggtccatgttctctgcatcaactttt |
17126066 |
T |
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