View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_61 (Length: 263)
Name: NF19906_low_61
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_61 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 226222 - 226474
Alignment:
| Q |
1 |
aagggaagcgagaaggcgttgaaggcgagtactcaataggcaactgaggtggttccagttcgccactaagcatcccgacaacctccttcattgaaggacg |
100 |
Q |
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| T |
226222 |
aagggaagcgagaaggcgttgaaggcgagtactcaataggcaactgaggtggttccagttcgccactaagcatcccgacaacctccttcattgaaggacg |
226321 |
T |
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| Q |
101 |
ccgagtaggtgatttaagcaaacaatgcaaagccaccttgatgcagatcagagcttggtccttatccaatgactgaatagaatcatcaaccagctcaatg |
200 |
Q |
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| T |
226322 |
ccgagtaggtgatttaagcaaacaatgcaaagccaccttgatgcagatcagagcttggtccttatccaatgactgaatagaatcatcaaccagctcaatg |
226421 |
T |
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| Q |
201 |
agcttcccgtttctcgcacaatggcgtgcccatgaaagaagattagccctttg |
253 |
Q |
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| T |
226422 |
agtttcccgtttctcgcacaatggcgtgcccatgaaagaagattagccctttg |
226474 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 46223768 - 46223677
Alignment:
| Q |
39 |
ggcaactgaggtggttccagttcgccactaagcatcccgacaacctccttcattgaaggacgccgagtaggtgatttaagcaaacaatgcaa |
130 |
Q |
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| T |
46223768 |
ggcaattgaggtggctccaattccccgctaagcattcctacaatctctttcattgaaggtctccgattaggcgacttaagcaaacaaagcaa |
46223677 |
T |
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