View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_62 (Length: 255)
Name: NF19906_low_62
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_62 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 28395859 - 28396095
Alignment:
| Q |
1 |
ttttttcaggttcggttcaatgatcgaagcgtatatccaccccacttcgcgacagggcatataggaagaatccgaggagacaattgcatacaaagacatg |
100 |
Q |
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| T |
28395859 |
ttttttcaggttcggttcaatgatcgaagtgtatatccaccccacttcgcgacagggcatataggaagaatccgaggagacaattgcatacaaagacatg |
28395958 |
T |
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| Q |
101 |
gaattcatggattgtataggttgttcagtattgatgtgccaagtaatcttcttttgaaaggaaagaacatcatatatctaacgcagaccaacgccgatac |
200 |
Q |
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| T |
28395959 |
gaattcatggattgtataggttgttcagtattgatgtgccaagtaatcttcttttgaaaggaaagaacatcatatatctaacgcagaccaacgccgatac |
28396058 |
T |
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| Q |
201 |
tcctttccaaggagttatgtatgattacatccgttta |
237 |
Q |
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| T |
28396059 |
tcctttccaaggagttatgtatgattacatccgttta |
28396095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 28408621 - 28408481
Alignment:
| Q |
97 |
catggaattcatggattgtataggttgttcagtattgatgtgccaagtaatcttcttttgaaaggaaagaacatcatatatctaacgcagaccaacgccg |
196 |
Q |
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| T |
28408621 |
catggaattcatggattgtatcggctgttcagcattaatgtgtctagtaaccttcttgtgaaaggaaagaacatcatctacctgaggcagtccaaagccg |
28408522 |
T |
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| Q |
197 |
atactcctttccaaggagttatgtatgattacatccgttta |
237 |
Q |
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| T |
28408521 |
atactcctttccaaggagttatgtacgattatattcgttta |
28408481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 28387103 - 28387325
Alignment:
| Q |
6 |
tcaggttcggttcaatgatcgaagcgtatatccaccccacttcgcgacagggcatataggaagaatccgaggagacaattgcatacaaagacatggaatt |
105 |
Q |
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|||||| ||||||||||||| ||| |||||||||| ||||| |||||||||| |||||| ||||||||| |||| ||||||||||||| |
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| T |
28387103 |
tcaggtacggttcaatgatcctagcatatatccaccgcactttgcgacagggctcatagga---------ggagacaatgccatagcaagacatggaatt |
28387193 |
T |
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| Q |
106 |
catggattgtataggttgttcagtattgatgtgccaagtaatcttcttttgaaaggaaagaacatcatatatctaacgcagaccaacgccgatactcctt |
205 |
Q |
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| T |
28387194 |
catggattgcattggttgttcagcattgacgtgcctagtgatcttcttgtgaaaggaaagaacatcgtctatctgagacaatcaaaagctcttagtccgt |
28387293 |
T |
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| Q |
206 |
tccaaggagttatgtatgattacatccgttta |
237 |
Q |
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| T |
28387294 |
ttcaaggagttatgtatgattatatccgttta |
28387325 |
T |
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