View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_67 (Length: 251)
Name: NF19906_low_67
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_67 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 25998113 - 25998337
Alignment:
| Q |
16 |
atatcaatacaaaaacgaaaggatgctatgttatgctattatcataagaattacatgcatcaaaaacatcatcataatcatgatcatgatcatgatccac |
115 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25998113 |
atatcaatacaaaaaccaaaggatgctatgttatgctattatcataagaattacatgcatcaaaaacatcatcataatcatgatc------------cac |
25998200 |
T |
|
| Q |
116 |
ataaaaagatggtaagattatatatgaaaatgaacaagtgnnnnnnnn-gagacccacataaaaatttaagaaattttttcaaacctttgaaagagatgg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25998201 |
ataaaaagatggtaagattatatatgaaaatgaacaactgaaaaaaaaagagacccacataaaaatttaagaaattttttcaaacctttgaaagagatgg |
25998300 |
T |
|
| Q |
215 |
aactagattaggaatccaagacaacgacaatgatgaa |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25998301 |
aactagattaggaatccaagacaacgacaatgatgaa |
25998337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University