View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19906_low_68 (Length: 250)

Name: NF19906_low_68
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19906_low_68
NF19906_low_68
[»] chr3 (3 HSPs)
chr3 (8-250)||(8948078-8948320)
chr3 (25-68)||(20367404-20367447)
chr3 (9-88)||(20797947-20798026)
[»] chr1 (4 HSPs)
chr1 (9-221)||(33259790-33260002)
chr1 (9-221)||(33279949-33280161)
chr1 (10-95)||(30650233-30650318)
chr1 (11-68)||(21409083-21409140)
[»] chr6 (2 HSPs)
chr6 (18-250)||(24573902-24574133)
chr6 (28-68)||(15106658-15106698)
[»] chr2 (2 HSPs)
chr2 (9-104)||(10289271-10289366)
chr2 (31-101)||(12807359-12807429)
[»] chr8 (1 HSPs)
chr8 (11-116)||(19773696-19773801)
[»] chr4 (3 HSPs)
chr4 (9-74)||(29133703-29133768)
chr4 (22-68)||(17951536-17951582)
chr4 (22-68)||(17955389-17955435)
[»] chr7 (2 HSPs)
chr7 (10-68)||(22818958-22819016)
chr7 (10-71)||(17721476-17721537)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 8948320 - 8948078
Alignment:
Q  8 tagcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacaggcgagattttat 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  8948320 tagcatagacagggagagaggtcaggacaaacttaagaagaacaagacggccaccgaaagaaagatgtttacttttccaacaggacagacgagattttat 8948221  T
Q  108 gcaattaaccacaagattcaataaatgcagtctacaagaatcaccttcaaaagggaggcccatgtacaaaatagaaaagctaccaattttacagttcaaa 207  Q
    ||||||||||||| ||||| | ||||||||||| | |||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||    
T  8948220 gcaattaaccacaggattccagaaatgcagtctccgagaatcaccttcaacaaggaggcccatgtacaaaataggaaagctaccaattttacagttcaaa 8948121  T
Q  208 acatttgcagcctcacgtaaccaagaatgaggaacattgatac 250  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8948120 acatttgcagcctcacgtaaccaagaatgaggaacattgatac 8948078  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 20367404 - 20367447
Alignment:
Q  25 gaggtcaggacaaacttaagaagaacaagacaaccaccaaaaga 68  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||    
T  20367404 gaggtcaggacaaccttaagatgaacaagacaaccaccaaaaga 20367447  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 20797947 - 20798026
Alignment:
Q  9 agcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaac 88  Q
    ||||||| |||| || ||||||||  || ||||||| |||||||||| ||||||||||||||||||  | ||||||||||    
T  20797947 agcatagacaggaagcgaggtcagtgcagacttaaggagaacaagacgaccaccaaaagaaagatgtatgcttttccaac 20798026  T

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Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 33260002 - 33259790
Alignment:
Q  9 agcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacaggcgagattttatg 108  Q
    ||||||| ||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||| || |||||||||| ||||||  |||||||| ||    
T  33260002 agcatagacagggagagagatcaagacagacttaagaagaacaagacgaccaccaaaagaaagatgtttgcttttccaacgggacagatgagattttgtg 33259903  T
Q  109 caattaaccacaagattcaataaatgcagtctacaagaatcaccttcaaaagggaggcccatgtacaaaatagaaaagctaccaattttacagttcaaaa 208  Q
    |||||||||||| ||||| | ||||||||||||| |||||||||| ||| |||||||||||  ||||| ||||  || |||| ||||||| ||||||| |    
T  33259902 caattaaccacaggattccaaaaatgcagtctacgagaatcacctccaacagggaggcccagatacaatataggcaaactacaaattttaaagttcaata 33259803  T
Q  209 catttgcagcctc 221  Q
    ||| |||||||||    
T  33259802 catatgcagcctc 33259790  T

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Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 33280161 - 33279949
Alignment:
Q  9 agcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacaggcgagattttatg 108  Q
    ||||||| ||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||| || |||||||||| ||||||  |||||||| ||    
T  33280161 agcatagacagggagagagatcaagacagacttaagaagaacaagacgaccaccaaaagaaagatgtttgcttttccaacgggacagatgagattttgtg 33280062  T
Q  109 caattaaccacaagattcaataaatgcagtctacaagaatcaccttcaaaagggaggcccatgtacaaaatagaaaagctaccaattttacagttcaaaa 208  Q
    |||||||||||| ||||| | ||||||||||||| |||||||||| ||| |||||||||||  ||||| ||||  || |||| ||||||| ||||||| |    
T  33280061 caattaaccacaggattccaaaaatgcagtctacgagaatcacctccaacagggaggcccagatacaatataggcaaactacaaattttaaagttcaata 33279962  T
Q  209 catttgcagcctc 221  Q
    ||| |||||||||    
T  33279961 catatgcagcctc 33279949  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 95
Target Start/End: Complemental strand, 30650318 - 30650233
Alignment:
Q  10 gcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacag 95  Q
    |||||| ||||||| |||||||| ||  |||| |  |||||||||| ||||||||||||||||||  | |||||||||| ||||||    
T  30650318 gcatagacagggagcgaggtcagcaccgactttaagagaacaagacgaccaccaaaagaaagatgtctgcttttccaaccggacag 30650233  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 21409083 - 21409140
Alignment:
Q  11 cataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaaga 68  Q
    ||||| |||| ||||||| ||||||| ||||||| ||||| |||| ||||||||||||    
T  21409083 catagacaggaagagaggacaggacagacttaaggagaaccagacgaccaccaaaaga 21409140  T

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Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 24573902 - 24574133
Alignment:
Q  18 agggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacaggcgagattttatgcaattaacc 117  Q
    |||||||||||||| |||| |||||||||||||||||| ||||||||||  |||||| ||  ||||||||| |||||  |||||||||||||||||||||    
T  24573902 agggagagaggtcaagacatacttaagaagaacaagacgaccaccaaaatgaagatgtttgtttttccaacgggacac-cgagattttatgcaattaacc 24574000  T
Q  118 acaagattcaataaatgcagtctacaagaatcaccttcaaaagggaggcccatgtacaaaatagaaaagctaccaattttacagttcaaaacatttgcag 217  Q
    ||| ||||| | |||||||||||||  ||||||||| ||| |||||||||||  ||||| |||   || |||||||||||||| || || |||| |||||    
T  24574001 acaggattccaaaaatgcagtctacgcgaatcacctccaacagggaggcccagatacaatataagcaaactaccaattttacaatttaagacatctgcag 24574100  T
Q  218 cctcacgtaaccaagaatgaggaacattgatac 250  Q
    ||||  |||||||||| | ||||| ||| ||||    
T  24574101 cctctagtaaccaagattcaggaagattaatac 24574133  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 15106698 - 15106658
Alignment:
Q  28 gtcaggacaaacttaagaagaacaagacaaccaccaaaaga 68  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  15106698 gtcaggacaaacttaagaagaataagacgaccaccaaaaga 15106658  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 10289366 - 10289271
Alignment:
Q  9 agcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacaggcgagattt 104  Q
    ||||||| |||| || |||||||||||  |||| || |||||||||| ||||||||||||||||||  | |||||||||| |||||||||||||||    
T  10289366 agcatagacaggaagcgaggtcaggaccgacttcaggagaacaagacgaccaccaaaagaaagatgtctgcttttccaaccggacaggcgagattt 10289271  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 12807429 - 12807359
Alignment:
Q  31 aggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacaggcgaga 101  Q
    ||||||||||| || |||||||| |  |||| ||||||||||||  |||||||||||| ||||||||||||    
T  12807429 aggacaaactttaggagaacaaggcggccacaaaaagaaagatgtctacttttccaaccggacaggcgaga 12807359  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 19773696 - 19773801
Alignment:
Q  11 cataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatgcttacttttccaacaggacaggcgagattttatgca 110  Q
    |||||||| |||| |||||||||||| | |||||||||| || |  |||||||||||| |||||  |||||||||||| ||||| |||| | || |||||    
T  19773696 cataggcatggagtgaggtcaggacagatttaagaagaataaaatgaccaccaaaagagagatgtctacttttccaacgggacatgcgaaacttaatgca 19773795  T
Q  111 attaac 116  Q
     |||||    
T  19773796 gttaac 19773801  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 29133703 - 29133768
Alignment:
Q  9 agcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaagatg 74  Q
    ||||||| ||| ||||||||||| |||| |||||||||||||||| |  |||||||||||||||||    
T  29133703 agcatagacagagagagaggtcaagacagacttaagaagaacaaggcggccaccaaaagaaagatg 29133768  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 17951536 - 17951582
Alignment:
Q  22 agagaggtcaggacaaacttaagaagaacaagacaaccaccaaaaga 68  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  17951536 agagatgtcaggacagacttaaggagaacaagacaaccaccaaaaga 17951582  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 17955389 - 17955435
Alignment:
Q  22 agagaggtcaggacaaacttaagaagaacaagacaaccaccaaaaga 68  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||    
T  17955389 agagatgtcaggacagacttaaggagaacaagacaaccaccaaaaga 17955435  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 22819016 - 22818958
Alignment:
Q  10 gcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaaga 68  Q
    |||||| |||| ||||||| |||||||  |||||||||||| |||| ||||||||||||    
T  22819016 gcatagacaggaagagaggacaggacagccttaagaagaactagacgaccaccaaaaga 22818958  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 17721476 - 17721537
Alignment:
Q  10 gcataggcagggagagaggtcaggacaaacttaagaagaacaagacaaccaccaaaagaaag 71  Q
    |||||| |||| ||||  |||||||| |||||||||||||| | || |||||||||||||||    
T  17721476 gcatagacaggtagagcagtcaggacgaacttaagaagaaccaaacgaccaccaaaagaaag 17721537  T

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