View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19906_low_7 (Length: 577)

Name: NF19906_low_7
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19906_low_7
NF19906_low_7
[»] chr1 (1 HSPs)
chr1 (1-577)||(6992766-6993342)


Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 6993342 - 6992766
Alignment:
Q  1 attggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6993342 attggagtctttcaatgcttctgggttcatgctcaatggttctattcctgagtggtttggtgagaagcttggtgcactaaaagagcttgatttaaggtct 6993243  T
Q  101 tgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttcag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6993242 tgttcaatatctggtgtgattcctggttcacttgggggcatgagaagtttgaagaagttgtttctttcaaggaacaatcttactagtagagtgccttcag 6993143  T
Q  201 gtttggggttgttatctaatctttctattctcgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaag 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6993142 gtttggggttgttatctaatctttctattcttgatctctctaggaatttgctttcaggatcagtacctgaatctttctctaagctcggtaacattacaag 6993043  T
Q  301 gcttgatctttctaataattatttatctggctctattccacctgaactaggtaccctttcaaatcttcaaaatttgaacctttctaacaattctttcact 400  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6993042 gcttgatctttcaaataattatttatctggctctattccacctgaactaggtaccctttcaaatcttcaaaatttgaacctttctaacaattctttcact 6992943  T
Q  401 tcttcgcttccctctcagctaggtaatctttcaaagttggttgagctcgatcttagtatgaattctctttctgggccgttgccgggtagtttgttgtcaa 500  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6992942 tcttcgcttccctctcagctaggtaatctttcaaagttggttgaactcgatcttagtatgaattctctttctgggccgttgccgggtagtttgttgtcaa 6992843  T
Q  501 tgcctaagttgctaatatttgatgtatcagacaacagtctcactgatccactaccaaaattgtctggtttaaatgtt 577  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6992842 tgcctaagttgctaatatttgatgtatcagaaaacagtctcactgatccactaccaaaattgtctggtttaaatgtt 6992766  T

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