View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_76 (Length: 248)
Name: NF19906_low_76
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_76 |
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Alignment Details
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 8985175 - 8985230
Alignment:
| Q |
174 |
gaaaaacaaactcaattttgctttttggtgtatctaacaatggccctagctattat |
229 |
Q |
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| T |
8985175 |
gaaaaacaaactcaattttgctttctggtgtatctaacaatggccctagctattat |
8985230 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 8984986 - 8985036
Alignment:
| Q |
1 |
ttaagaaatcactatactcgcataccatatctcaattttaaattaagccca |
51 |
Q |
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| T |
8984986 |
ttaagaaatcacaatactcacataccatatctcaattttaaattaaaccca |
8985036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 159
Target Start/End: Original strand, 8985129 - 8985158
Alignment:
| Q |
130 |
tttattgtctacatactttcaataaagtag |
159 |
Q |
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| T |
8985129 |
tttattgtctacatactttcaataaagtag |
8985158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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