View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_79 (Length: 245)
Name: NF19906_low_79
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_79 |
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| [»] chr4 (2 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 19181261 - 19181120
Alignment:
| Q |
11 |
ttattcttcaactatcaccgcatatcatcacctctccggctgtatatattaagctatttccccctcgtttgttgcaattagctaagccatgttttatttt |
110 |
Q |
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| T |
19181261 |
ttattcttcaactataaccgtatatcatcacctctccggct--atatattaagctctttccacctcgtttgttgcaattagctaacccatgttttatttt |
19181164 |
T |
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| Q |
111 |
tcactcaattgttttcaattttcgcca--aaaatcccttcccta |
152 |
Q |
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| T |
19181163 |
tcactcaattgttttcaattttcgccaaaaaaatcccttcccta |
19181120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 19181054 - 19180969
Alignment:
| Q |
160 |
aagatcacctaccaagtaatatatattttcgtttctttttaattcctcttgttgatttgttttagattatcacttcttacttcatt |
245 |
Q |
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| T |
19181054 |
aagatcacctaccaagtaatatatattttcttttctttttaattcctcttgttgatctgttttagattatcacttcttacttcatt |
19180969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 245
Target Start/End: Complemental strand, 758670 - 758590
Alignment:
| Q |
165 |
cacctaccaagtaatatatattttcgtttctttttaattcctcttgttgatttgttttagattatcacttcttacttcatt |
245 |
Q |
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| T |
758670 |
cacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcatt |
758590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 758888 - 758759
Alignment:
| Q |
13 |
attcttcaactatcaccgcatatcatcacctctcc-ggctgtatatattaagctatttccccctcgtttgttgcaattagctaagccatgttttattttt |
111 |
Q |
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| T |
758888 |
attcttcaaccaccaccacatatcatcacctctcctggctatatatattaagctcttgccca-tcatttgttgcaattagctaacccatcttttgttttt |
758790 |
T |
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| Q |
112 |
-cactcaattgttttcaattttcgccaaaaa |
141 |
Q |
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| T |
758789 |
tcactcaattgtttccaattttccccaaaaa |
758759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 36988701 - 36988781
Alignment:
| Q |
165 |
cacctaccaagtaatatatattttcgtttctttttaattcctcttgttgatttgttttagattatcacttcttacttcatt |
245 |
Q |
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| T |
36988701 |
cacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcatt |
36988781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 37014140 - 37014220
Alignment:
| Q |
165 |
cacctaccaagtaatatatattttcgtttctttttaattcctcttgttgatttgttttagattatcacttcttacttcatt |
245 |
Q |
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| T |
37014140 |
cacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcatt |
37014220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 36988487 - 36988614
Alignment:
| Q |
13 |
attcttcaactatcaccgcatatcatcacctctcc-ggctgtatatattaagctatttccccctcgtttgttgcaattagctaagccatgtttta-tttt |
110 |
Q |
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| T |
36988487 |
attcttcaaccaccaccacatatcatcacctctcctggct--atatattaagctcttgccca-tcatttgttgcaattagctaacccatcttttattttt |
36988583 |
T |
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| Q |
111 |
tcactcaattgttttcaattttcgccaaaaa |
141 |
Q |
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| T |
36988584 |
tcactcacttgtttccaattttccccaaaaa |
36988614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 141
Target Start/End: Original strand, 37013926 - 37014053
Alignment:
| Q |
13 |
attcttcaactatcaccgcatatcatcacctctcc-ggctgtatatattaagctatttccccctcgtttgttgcaattagctaagccatgtttta-tttt |
110 |
Q |
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| T |
37013926 |
attcttcaaccaccaccacatatcatcacctctcctggct--atatattaagctcttgccca-tcatttgttgcaattagctaacccatcttttattttt |
37014022 |
T |
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| Q |
111 |
tcactcaattgttttcaattttcgccaaaaa |
141 |
Q |
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| T |
37014023 |
tcactcacttgtttccaattttccccaaaaa |
37014053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 36443880 - 36443811
Alignment:
| Q |
176 |
taatatatattttcgtttctttttaattcctcttgttgatttgttttagattatcacttcttacttcatt |
245 |
Q |
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| T |
36443880 |
taatatatattttctcttctttttaattccctttgttgatttgtcttagtttatcacttcttacttcatt |
36443811 |
T |
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