View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_80 (Length: 240)
Name: NF19906_low_80
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_80 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 19180905 - 19180693
Alignment:
| Q |
15 |
taagattctatcaaattcaaagtcttaagcaccattgttgtctcaagttaattaaagtttcttacaaaagcttccaatatttcaatcttagttacgaaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19180905 |
taagattctatcaaattcaaagtcttaagcacaattgttgtctcaagttaattaaagtttcttacaaaagcttccaatatttcaatcttagttaccaaaa |
19180806 |
T |
|
| Q |
115 |
tgtgccacaaactcaataacaaccacgaagtctcaaataaattgacatctagctaccattcaatttcaatctacattactagcttgtgga---aggtctt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
19180805 |
tgtgccacaaactcaataacaaccacgaaatctcaaataaattgacatctagctaccattcaatttcaatatacattactagcttgtggagggtggtctt |
19180706 |
T |
|
| Q |
212 |
acgttactaaaca |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19180705 |
acgttactaaaca |
19180693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 207
Target Start/End: Complemental strand, 758277 - 758097
Alignment:
| Q |
24 |
atcaaattcaaagtcttaagcaccattgttgtctcaagttaattaaagtttcttacaaaagcttccaatatttcaatcttagttacgaaaatgtgccaca |
123 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||| |||||||||| | |
|
|
| T |
758277 |
atcaaattcaaagccataatcaccattgttgtctcaagttaattaaagtttcttacaaaagattcc---atttcaattttaggtaccaaaatgtgcccta |
758181 |
T |
|
| Q |
124 |
aactcaataacaaccacgaagtctcaaataaattgacatc-tag-----ctaccattcaatttcaatctacattactagcttgtggaagg |
207 |
Q |
| |
|
|| | || | | || | ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
758180 |
aatttaaaagta------aaatttcaaataaattgacatcttagctaccctaccattcaatttcaatctacattaatagcttgtggaagg |
758097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 36989094 - 36989274
Alignment:
| Q |
24 |
atcaaattcaaagtcttaagcaccattgttgtctcaagttaattaaagtttcttacaaaagcttccaatatttcaatcttagttacgaaaatgtgccaca |
123 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||| |||||||||| | |
|
|
| T |
36989094 |
atcaaattcaaagccataatcaccattgttgtctcaagttaattaaagtttcttacaaaagattcc---atttcaattttaggtaccaaaatgtgcccta |
36989190 |
T |
|
| Q |
124 |
aactcaataacaaccacgaagtctcaaataaattgacatc-tag-----ctaccattcaatttcaatctacattactagcttgtggaagg |
207 |
Q |
| |
|
|| | || | | || | ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36989191 |
aatttaaaagta------aaatttcaaataaattgacatcttagctaccctaccattcaatttcaatctacattaatagcttgtggaagg |
36989274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 37014533 - 37014713
Alignment:
| Q |
24 |
atcaaattcaaagtcttaagcaccattgttgtctcaagttaattaaagtttcttacaaaagcttccaatatttcaatcttagttacgaaaatgtgccaca |
123 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| ||| |||||||||| | |
|
|
| T |
37014533 |
atcaaattcaaagccataatcaccattgttgtctcaagttaattaaagtttcttacaaaagattcc---atttcaattttaggtaccaaaatgtgcccta |
37014629 |
T |
|
| Q |
124 |
aactcaataacaaccacgaagtctcaaataaattgacatc-tag-----ctaccattcaatttcaatctacattactagcttgtggaagg |
207 |
Q |
| |
|
|| | || | | || | ||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37014630 |
aatttaaaagta------aaatttcaaataaattgacatcttagctaccctaccattcaatttcaatctacattaatagcttgtggaagg |
37014713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University