View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_81 (Length: 239)
Name: NF19906_low_81
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_81 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 2449174 - 2448954
Alignment:
| Q |
19 |
gctacatcattaactgctgcagccgacatagccattcttccaacactagtggttagaagttttaactcggccaaaatacgggctaatacaggaaaagcag |
118 |
Q |
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| T |
2449174 |
gctacatcattaactgctgcagccgacatagccattcttccaacactagtggttagaagttttaactcagccaaaatacgggctaatacaggaaaagcag |
2449075 |
T |
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| Q |
119 |
ttatagacagagcgacccccatatatacgagaaatgcggaagtatttacgcctttggcaattgatctatgtagaacaaatgatgaaccaattcctagtgc |
218 |
Q |
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| T |
2449074 |
ttatagacagagcgacccccatatatacgagaaatgcggaagtatttacgcctttggcaattgttctttgtagaacaaatgatgaaccaattcctagtgc |
2448975 |
T |
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| Q |
219 |
aaacggtaagcttattccggc |
239 |
Q |
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| T |
2448974 |
aaacggtaagcttattccggc |
2448954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 2460193 - 2459972
Alignment:
| Q |
18 |
agctacatcattaactgctgcagccgacatagccattcttccaacactagtggttagaagttttaactcggccaaaatacgggctaatacaggaaaagca |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2460193 |
agctacatcattaactgctgcagctgacatagccattctgccgacactagtggttagaagttttaactcggccaaaatacgggctaatacaggaaacgca |
2460094 |
T |
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| Q |
118 |
gttatagacagagcgacccccatatatacgagaaatgcggaagtatttacgcctttggcaattgatctatgtagaacaaatgatgaaccaattcctagtg |
217 |
Q |
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| T |
2460093 |
tttatagacagagcgacccccatatatacgagaaatgcagaagtatttacgcctttggcaattgttccttgccgaacaaatgacgaaccaattcttagtg |
2459994 |
T |
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| Q |
218 |
caaacggtaagcttattccggc |
239 |
Q |
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| T |
2459993 |
caaagggtaagcttattccggc |
2459972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 2444420 - 2444202
Alignment:
| Q |
19 |
gctacatcattaactgctgcagccgacatagccattcttccaacactagtggttagaagttttaactcggccaaaatacgggctaatacaggaaaagcag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2444420 |
gctacatcattaactgctgcagccgacatagccattcgtccgacactggtggttaaaagttttaactcggccaaaatacgagctaatacaggaaaagcag |
2444321 |
T |
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| Q |
119 |
ttatagacagagcgacccccatatatacgagaaatgcggaagtatttacgcctttggcaattgatctatgtagaacaaatgatgaaccaattcctagtgc |
218 |
Q |
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||||||| ||||| || ||||||||||| |||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||| ||||| |
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| T |
2444320 |
ttatagagagagcaactcccatatatacaagaaatgcggaagtatttacatctttggcaatcgtttctttcagaacaaatgatgaaccaattcccagtgc |
2444221 |
T |
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| Q |
219 |
aaacggtaagcttattccg |
237 |
Q |
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||| ||||||||||||||| |
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| T |
2444220 |
aaagggtaagcttattccg |
2444202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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