View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19906_low_9 (Length: 547)
Name: NF19906_low_9
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 17499353 - 17499603
Alignment:
| Q |
15 |
agagaccatagcttttgtgatgtgtgggaagtgtgtgggaccatataagatgaatgtggtaagtgttggggcccatttgtaaaatatactcgtggaacat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17499353 |
agagaccatagcttttgtgatgtgtgggaagtgtgtgggaccatataagatgaatgtggtaagtgttggggcccatttgtaaaatatactcgtggaacat |
17499452 |
T |
|
| Q |
115 |
tgcaatcctattatgaagggtttgtttactttgataatttatcttatattataaataatctttaaaaactaaatttagttagacagtttaattattaatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17499453 |
tgcaatcctattatgaagggtttgtttactttgataatttatcttatattataaataatctttaaaaactaaatttagttagacagtttaattattaatt |
17499552 |
T |
|
| Q |
215 |
agttaaaccatgtcatcaagttcaaaaactgaatttagttagacagttcaa |
265 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17499553 |
agttaaaccatgtcatcaagttaaaaaactgaatttagttagacagttcaa |
17499603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 319 - 526
Target Start/End: Original strand, 17499716 - 17499923
Alignment:
| Q |
319 |
taaattaatgaaaatattgtatataaattatcatcgataagtatcgtaaatttaaaatgataaattcaattctatctatttgttaaagacaattagttga |
418 |
Q |
| |
|
||||| |||| || |||||||||| || |||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17499716 |
taaataaatgtaagtattgtatattaactatcattgataagtattgtaaatttaaaatgatgaattcaattctatctatttgttaaagacaattagttga |
17499815 |
T |
|
| Q |
419 |
aatgtgaactaagacttttgtttgtggcggtgcatcaattttatttgatataaaatgtgttttgtacataactttttatgatctacaaatgaacaatggc |
518 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17499816 |
aatgtgaattaagacttttgtttgtgggggtgcattaattttatttgatgaaaaatgtgttttgtacataattttttatgatctacaaatgaacaatggc |
17499915 |
T |
|
| Q |
519 |
taatatgc |
526 |
Q |
| |
|
|||||||| |
|
|
| T |
17499916 |
taatatgc |
17499923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 17499576 - 17499635
Alignment:
| Q |
178 |
aaaaactaaatttagttagacagtttaattattaattagttaaaccatgtcatcaagttc |
237 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17499576 |
aaaaactgaatttagttagacagttcaattattaattagttcaaccatgtgatcaagttc |
17499635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University