View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19906_low_90 (Length: 224)
Name: NF19906_low_90
Description: NF19906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19906_low_90 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 33899805 - 33899581
Alignment:
| Q |
1 |
caagattagattaaatgaaatattgatggagcatcaaatgccaacctaagtaattcagcatgtggaggcatttttagtaaccatgatgcaaatgccttat |
100 |
Q |
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| T |
33899805 |
caagattagattaaatgaaatattgatggagcatcaaatgccaacctaagtaattcagcatgtggaggcatttttagtaaccatgatgcaaatgccttat |
33899706 |
T |
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| Q |
101 |
gctgttttgatgaacctttaggcataacttcttcctatcaagaagagcactgtggttttatcagaagctcctttgtttattagaga-ttatataaagaac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33899705 |
gctgttttgatgaacctttaggcataacttcttcctatcaagaagagcactgtggttttatcagaagctcctttgtttattagagatttatataaagaac |
33899606 |
T |
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| Q |
200 |
aaactaggttggcctaattatagat |
224 |
Q |
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| T |
33899605 |
aaactaggttggcctaattatagat |
33899581 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 33017397 - 33017462
Alignment:
| Q |
12 |
taaatgaaatattgatggagcatcaaatgccaacctaagtaattcagcatgtggaggcatttttag |
77 |
Q |
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|||||| |||||||||||||| ||||||| ||| | | |||||||| |||||||||| || ||||| |
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| T |
33017397 |
taaatgcaatattgatggagcctcaaatggcaatccaggtaattcaacatgtggagggatatttag |
33017462 |
T |
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