View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19907_high_1 (Length: 463)
Name: NF19907_high_1
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19907_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 26422023 - 26422464
Alignment:
| Q |
18 |
ctcaggggatggatgtggagagcacaggtgtggaatgacattaaaagaattgattactggaaatatcgtggaacagggggagaaaacacctaagttagtt |
117 |
Q |
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| T |
26422023 |
ctcaggggatggatgtggagagcacaggtgtggaataacattaaaagaattgattactggaaatattgtggaacagggggagaaaac---taagttagtt |
26422119 |
T |
|
| Q |
118 |
attcattaagaaagacaattcatagaagagactatatgagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtgg |
217 |
Q |
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| T |
26422120 |
attcattgagaaagacaattcatagaagagactatatgagaagatgcttccaaactttaagactccagccggagaaaatagctgaagttcaggcatgtgg |
26422219 |
T |
|
| Q |
218 |
tgatgcacattcagggaaagattaatattttagggataaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattgg |
317 |
Q |
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| T |
26422220 |
tgatgcacattcagggacagattaatattttagggataaaaaagaactcaaaggaaactgcaagtggaactaaaatctggagtacaaaagtgaatattgg |
26422319 |
T |
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| Q |
318 |
ggaggaataaaattgaaaagggcgatatgagaatagtggtgtcaagtgggaggagtcagttgctggaattttgatgatgggcacaaattttttctgagtg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
26422320 |
ggaggaataaaattgaaaagggcgatatgagaatagtggtgtcaagtgggaggagtcagttgcgggaattttgatgatgggcacaaatttcttctgagtg |
26422419 |
T |
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| Q |
418 |
aggagctttacttcaggttttgcgggaattttgatgatgtccatc |
462 |
Q |
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| T |
26422420 |
aggagctttacttcaggttttgcgggaattttgatgatggccatc |
26422464 |
T |
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