View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19907_high_10 (Length: 230)

Name: NF19907_high_10
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19907_high_10
NF19907_high_10
[»] chr5 (7 HSPs)
chr5 (14-217)||(3050905-3051110)
chr5 (39-189)||(13948764-13948914)
chr5 (79-196)||(40299910-40300027)
chr5 (61-135)||(29754951-29755025)
chr5 (61-96)||(23976637-23976672)
chr5 (61-171)||(26683510-26683620)
chr5 (86-135)||(13907619-13907668)
[»] chr1 (8 HSPs)
chr1 (46-196)||(34696085-34696235)
chr1 (58-196)||(2002531-2002669)
chr1 (58-117)||(47726350-47726409)
chr1 (58-117)||(47747656-47747715)
chr1 (61-195)||(30981235-30981369)
chr1 (61-117)||(16678741-16678797)
chr1 (157-196)||(4614898-4614937)
chr1 (86-135)||(44312836-44312885)
[»] scaffold0019 (1 HSPs)
scaffold0019 (39-196)||(73313-73470)
[»] chr8 (5 HSPs)
chr8 (61-196)||(42080472-42080607)
chr8 (61-183)||(23558673-23558795)
chr8 (61-117)||(10601181-10601237)
chr8 (58-117)||(20526164-20526225)
chr8 (86-135)||(33213670-33213719)
[»] scaffold0013 (1 HSPs)
scaffold0013 (89-196)||(42455-42562)
[»] chr6 (3 HSPs)
chr6 (68-185)||(17391994-17392112)
chr6 (41-136)||(17397771-17397868)
chr6 (61-135)||(30140935-30141009)
[»] chr2 (4 HSPs)
chr2 (39-196)||(14995205-14995363)
chr2 (61-98)||(2973416-2973453)
chr2 (70-135)||(14231092-14231157)
chr2 (66-98)||(10973548-10973580)
[»] chr3 (3 HSPs)
chr3 (78-135)||(12749491-12749548)
chr3 (61-117)||(12370782-12370838)
chr3 (41-98)||(12526565-12526622)
[»] scaffold0650 (1 HSPs)
scaffold0650 (71-171)||(310-410)
[»] chr4 (5 HSPs)
chr4 (88-196)||(37061073-37061181)
chr4 (61-184)||(54027699-54027822)
chr4 (61-135)||(27066343-27066417)
chr4 (61-135)||(27087444-27087518)
chr4 (65-114)||(12355314-12355363)
[»] scaffold0643 (1 HSPs)
scaffold0643 (61-135)||(1117-1191)
[»] chr7 (1 HSPs)
chr7 (87-135)||(21021634-21021682)


Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 3050905 - 3051110
Alignment:
Q  14 aatattcgttgagacaaatctaacattttttattt--aaacaaagttgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaa 111  Q
    |||||||||||||| ||||||||| | |||| |||  |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  3050905 aatattcgttgagataaatctaacttctttttttttaaaacaaaggtgtttatagcatatcattaatgatcaaagtttcaatacaataaggtagatgaaa 3051004  T
Q  112 ataaatgacgggattagctagaaacatgatctctcctacgagagtatgagcaaccacatttgtttgtctcctagcaaaatccaccagagtaaaccatgat 211  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  3051005 ataaacgacgggattagctaggaacatgatctctcctacgagagtatgagcaaccacatttgtttgtctcctagcaaaatccacccgagtaaaccgtgat 3051104  T
Q  212 aatagt 217  Q
    ||||||    
T  3051105 aatagt 3051110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 39 - 189
Target Start/End: Original strand, 13948764 - 13948914
Alignment:
Q  39 ttttttatttaaacaaagttgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacat 138  Q
    |||||| ||||||| ||  || ||||||||||||| || |||||||||||||||||||||| |||| |||||||||||  |||| | ||||||||||| |    
T  13948764 ttttttttttaaactaatgtgcttatagcatatcaataataatcaaagtttcaatacaatagggtatatgaaaataaacaacggaactagctagaaacgt 13948863  T
Q  139 gatctctcctacgagagtatgagcaaccacatttgtttgtctcctagcaaa 189  Q
    || ||||| | |||||||||||| ||| ||||||| |||||||||| ||||    
T  13948864 gacctctcatgcgagagtatgagaaactacatttgcttgtctcctaacaaa 13948914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 40300027 - 40299910
Alignment:
Q  79 aatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatgagcaaccacatttgtttgt 178  Q
    ||||||||| |||||||||   |||| |||||||||||  |||| | |||| |||||  ||  |||| |||||||||||||||||||||| |||| ||||    
T  40300027 aatcaaagtctcaatacaaagtggtatatgaaaataaacaacggaactagcgagaaatgtggcctcttctacgagagtatgagcaaccacgtttgcttgt 40299928  T
Q  179 ctcctagcaaaatccacc 196  Q
    | |||| |||| ||||||    
T  40299927 cgcctaacaaactccacc 40299910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 29754951 - 29755025
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||||| |||||| |||||||||||||||||||||  |||| ||||||||| ||  ||||| |||| |||||    
T  29754951 ttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaa 29755025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 23976672 - 23976637
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaataca 96  Q
    |||||||||||||||| |||||||||||||||||||    
T  23976672 ttatagcatatcattaataatcaaagtttcaataca 23976637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 26683620 - 26683510
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatga 160  Q
    |||||| || |||||||||||| ||||||||||||||    ||| ||||||||||||  ||||| |||| |||||  ||  ||| ||| | |||||||||    
T  26683620 ttatagaatttcattagtaatcgaagtttcaatacaactgagtatatgaaaataaatagcgggactagcaagaaatgtggcctcccctgcaagagtatga 26683521  T
Q  161 gcaaccacatt 171  Q
    || ||||||||    
T  26683520 gccaccacatt 26683510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 13907619 - 13907668
Alignment:
Q  86 gtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    |||||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  13907619 gtttcaatacaagaagggatatgataataaatgacgggactagctagaaa 13907668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 196
Target Start/End: Original strand, 34696085 - 34696235
Alignment:
Q  46 tttaaacaaagttgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctct 145  Q
    |||||| |||| || ||||| |||||||||| |||||||||||||||||||||  |||| |||||||||||  ||| || ||||||||||| || |||||    
T  34696085 tttaaataaaggtgcttatatcatatcattaataatcaaagtttcaatacaatggggtatatgaaaataaacaacgagactagctagaaacgtggtctct 34696184  T
Q  146 cctacgagagtatgagcaaccacatttgtttgtctcctagcaaaatccacc 196  Q
    ||| |||||||||||||||||||||||  ||||||||||||||| ||||||    
T  34696185 ccttcgagagtatgagcaaccacattttcttgtctcctagcaaactccacc 34696235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 2002531 - 2002669
Alignment:
Q  58 tgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagta 157  Q
    |||||||||||| |||||| ||||||||||||||||||||  ||||| |  ||||||| | || ||| |||| |||||  || |||||| | ||||||||    
T  2002531 tgtttatagcatctcattaataatcaaagtttcaatacaactaggtataataaaataagtaactggactagcgagaaatgtggtctctcatgcgagagta 2002630  T
Q  158 tgagcaaccacatttgtttgtctcctagcaaaatccacc 196  Q
    |||||||||||||||| |||||||||  |||| ||||||    
T  2002631 tgagcaaccacatttgcttgtctcctgacaaactccacc 2002669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 47726409 - 47726350
Alignment:
Q  58 tgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaat 117  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||    
T  47726409 tgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaat 47726350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 47747715 - 47747656
Alignment:
Q  58 tgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaat 117  Q
    |||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||    
T  47747715 tgtttatagcatttcattagtaatcaaagtttcaatacaattgggtatatgaaaataaat 47747656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 30981369 - 30981235
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatga 160  Q
    ||||| ||| |||||| |||| |||||||||||||||   |||| |  ||||||| | |||| | |||| |||||  ||| || |||| |||||||||||    
T  30981369 ttataacatgtcattaataattaaagtttcaatacaactgggtataacaaaataagtaacggaactagcgagaaatgtgacctttcctgcgagagtatga 30981270  T
Q  161 gcaaccacatttgtttgtctcctagcaaaatccac 195  Q
    |||||||||||| ||||||||||| |||| |||||    
T  30981269 gcaaccacatttatttgtctcctaacaaactccac 30981235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 16678741 - 16678797
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaat 117  Q
    ||||||||| ||||||||||||||||||||||| ||||  |||| ||||||||||||    
T  16678741 ttatagcatttcattagtaatcaaagtttcaatccaattgggtatatgaaaataaat 16678797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 4614937 - 4614898
Alignment:
Q  157 atgagcaaccacatttgtttgtctcctagcaaaatccacc 196  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  4614937 atgagcaaccacatttgtttgtcgcctagcaaactccacc 4614898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 44312836 - 44312885
Alignment:
Q  86 gtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    |||||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  44312836 gtttcaatacaagaagggatatgataataaatgacgggactagctagaaa 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 73313 - 73470
Alignment:
Q  39 ttttttatttaaacaaagttgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacat 138  Q
    |||||| |||||| |||| |||||||| |||||||||| |||||||||||||||||||||  |||| || ||| ||||  |||||| ||||||||||| |    
T  73313 ttttttttttaaataaaggtgtttataacatatcattaataatcaaagtttcaatacaattgggtatataaaagtaaacaacgggactagctagaaacgt 73412  T
Q  139 gatctctcctacgagagtatgagcaaccacatttgtttgtctcctagcaaaatccacc 196  Q
    | |||||||| |||| |||| |||||||||||||| ||||||| ||||||| ||||||    
T  73413 ggtctctcctgcgagtgtatcagcaaccacatttgcttgtctcttagcaaactccacc 73470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 42080607 - 42080472
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatga 160  Q
    |||| |||||| |||| ||||||||||| ||||| |||  |||  |||||||||||  |||||||| |||| |||  || |||||||| | |||||||||    
T  42080607 ttattgcatattattaataatcaaagttccaatataatttggtgtatgaaaataaacaacgggattggctacaaatgtggtctctcctgcaagagtatga 42080508  T
Q  161 gcaaccacatttgtttgtctcctagcaaaatccacc 196  Q
    |||| |||||||| ||||||||||||||| ||||||    
T  42080507 gcaatcacatttgcttgtctcctagcaaactccacc 42080472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 183
Target Start/End: Complemental strand, 23558795 - 23558673
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatga 160  Q
    ||||| ||| ||||||  ||||||||| |||||||| |  ||||  |||||||||||   |||| ||||||||||  | ||||||||| | |||||||||    
T  23558795 ttataacatttcattaacaatcaaagtctcaatacattggggtatgtgaaaataaatagtgggactagctagaaatgttatctctcctgcaagagtatga 23558696  T
Q  161 gcaaccacatttgtttgtctcct 183  Q
     |||||||||||| |||||||||    
T  23558695 acaaccacatttgcttgtctcct 23558673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 10601237 - 10601181
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaat 117  Q
    ||||||||| |||||||||||||||||||||||| |||  |||| ||||| ||||||    
T  10601237 ttatagcatttcattagtaatcaaagtttcaatataattgggtatatgaagataaat 10601181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 20526164 - 20526225
Alignment:
Q  58 tgtttatagcatatcattagta--atcaaagtttcaatacaataaggtagatgaaaataaat 117  Q
    |||||||||||| |||||||||  || ||||||||||||||||  |||| ||||||||||||    
T  20526164 tgtttatagcatttcattagtataattaaagtttcaatacaattgggtatatgaaaataaat 20526225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 33213719 - 33213670
Alignment:
Q  86 gtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    |||||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  33213719 gtttcaatacaagaagggatatgataataaatgacgggactagctagaaa 33213670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 196
Target Start/End: Original strand, 42455 - 42562
Alignment:
Q  89 tcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatgagcaaccacatttgtttgtctcctagcaa 188  Q
    ||||||||| | |||| || ||||||||  |||||| ||||  ||||| ||  ||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  42455 tcaatacaagagggtatataaaaataaacaacgggactagcgtgaaacgtggcctctcctacgagagtatgaacaaccacgtttgtttgtcgcctagcaa 42554  T
Q  189 aatccacc 196  Q
    | ||||||    
T  42555 actccacc 42562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 17391994 - 17392112
Alignment:
Q  68 atatcattagtaatcaaagtttcaatacaataaggtagat-gaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatgagcaacc 166  Q
    ||||||||| |||||||||||||||||||||| |||| || | |||||||  |||||| |||  | |||| |   ||||||| ||||| |||||||||||    
T  17391994 atatcattaataatcaaagtttcaatacaatagggtatatgggaaataaacaacgggactagaaaaaaacgtagcctctcctgcgagactatgagcaacc 17392093  T
Q  167 acatttgtttgtctcctag 185  Q
    ||||||| || ||||||||    
T  17392094 acatttgcttatctcctag 17392112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 17397771 - 17397868
Alignment:
Q  41 ttttatttaaacaaagttgtttatagcatatcat--tagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaac 136  Q
    |||| |||||| |||| || ||||||||||||||  || |||||||| ||| |||||||||||||| |||||||||||  |||| | |||||||||||    
T  17397771 ttttttttaaaaaaaggtgcttatagcatatcatattaataatcaaaattttaatacaataaggtatatgaaaataaacaacggaactagctagaaac 17397868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 30140935 - 30141009
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||||| |||||| |||||||||||||||||||||  |||| ||||||||| ||  ||||| |||| |||||    
T  30140935 ttatagcatttcattaataatcaaagtttcaatacaattgggtatatgaaaatagatagcgggactagcgagaaa 30141009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 14995363 - 14995205
Alignment:
Q  39 ttttttatttaaacaaagttgtttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacg-ggattagctagaaaca 137  Q
    |||||| | ||||||||  || ||||| |||||||||| | |||||||| ||||||||||| |||| |||||||||||  |   ||| || ||| |||      
T  14995363 ttttttttataaacaaacgtgcttataacatatcattaatgatcaaagtctcaatacaatatggtatatgaaaataaacaaaacggactatctaaaaatg 14995264  T
Q  138 tgatctctcctacgagagtatgagcaaccacatttgtttgtctcctagcaaaatccacc 196  Q
    |   |||| |||||||||||||||||| |||||||  ||||||||||||||| ||||||    
T  14995263 tagcctcttctacgagagtatgagcaatcacatttccttgtctcctagcaaactccacc 14995205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 2973416 - 2973453
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaat 98  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2973416 ttatagcatttcattagtaatcaaagtttcaatacaat 2973453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 14231157 - 14231092
Alignment:
Q  70 atcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||| |||||||||||||||||||||  |||| ||||||||| || |||||| |||| |||||    
T  14231157 atcattaataatcaaagtttcaatacaattgggtatatgaaaatagataacgggactagcgagaaa 14231092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 10973548 - 10973580
Alignment:
Q  66 gcatatcattagtaatcaaagtttcaatacaat 98  Q
    |||| ||||||||||||||||||||||||||||    
T  10973548 gcatttcattagtaatcaaagtttcaatacaat 10973580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 12749548 - 12749491
Alignment:
Q  78 taatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||||| |||| |||||    
T  12749548 taatcaaagtttcaatacaattaggtacatgaaaataaataacgggactagcgagaaa 12749491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 12370782 - 12370838
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaat 117  Q
    ||||||||| | ||||||||||||||||||||||||||  | || ||||||||||||    
T  12370782 ttatagcattttattagtaatcaaagtttcaatacaattggatatatgaaaataaat 12370838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 12526565 - 12526622
Alignment:
Q  41 ttttatttaaacaaagttgtttatagcatatcattagtaatcaaagtttcaatacaat 98  Q
    |||| |||||| |||| |||||||||||| |||||| |||| | ||||||||||||||    
T  12526565 ttttttttaaagaaagatgtttatagcatttcattaataataatagtttcaatacaat 12526622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 171
Target Start/End: Original strand, 310 - 410
Alignment:
Q  71 tcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatgagcaaccacat 170  Q
    |||||||||||||||| |||||||||||  |||| ||||||||||||  ||| | |||| |||||  ||||||| ||| | ||||||||| | |||||||    
T  310 tcattagtaatcaaagcttcaatacaattgggtatatgaaaataaatagcggaactagcaagaaatgtgatctccccttcaagagtatgaaccaccacat 409  T
Q  171 t 171  Q
    |    
T  410 t 410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 196
Target Start/End: Original strand, 37061073 - 37061181
Alignment:
Q  88 ttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatgagcaaccacatttgtttgtctcctagca 187  Q
    |||||||||||  ||||  | ||||||||  |||||| ||||||||||||||   |||| | | ||   ||||||||||||||||||||||| |||||||    
T  37061073 ttcaatacaatcgggtatgttaaaataaacaacgggactagctagaaacatggcttctcttgcaagcacatgagcaaccacatttgtttgtcacctagca 37061172  T
Q  188 aaatccacc 196  Q
    || ||||||    
T  37061173 aactccacc 37061181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 184
Target Start/End: Original strand, 54027699 - 54027822
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaacatgatctctcctacgagagtatga 160  Q
    ||||| ||| |||||| ||||||||||||||||| |||  |||| ||||||||||||  ||||| |||| |||||  ||   || ||||| ||||| |||    
T  54027699 ttatatcatttcattaataatcaaagtttcaatataattgggtatatgaaaataaatagcgggagtagcgagaaatgtggcttcccctacaagagtgtga 54027798  T
Q  161 gcaaccacatttgtttgtctccta 184  Q
    || |||||||| | ||||| ||||    
T  54027799 gccaccacattagcttgtcgccta 54027822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 27066343 - 27066417
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||||| |||||| |||||||||||||||||||||   ||| ||||||||| ||  ||||| |||| |||||    
T  27066343 ttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaa 27066417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 27087444 - 27087518
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||||| |||||| |||||||||||||||||||||   ||| ||||||||| ||  ||||| |||| |||||    
T  27087444 ttatagcatttcattaataatcaaagtttcaatacaattgagtatatgaaaatagatagcgggactagcgagaaa 27087518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 12355363 - 12355314
Alignment:
Q  65 agcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaata 114  Q
    ||||| |||||| |||||||||||||||||||||  |||| |||||||||    
T  12355363 agcatttcattaataatcaaagtttcaatacaattgggtatatgaaaata 12355314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 1191 - 1117
Alignment:
Q  61 ttatagcatatcattagtaatcaaagtttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||||| |||||| ||||||||  |||||||||||  |||| ||||||||||||  ||||| |||| |||||    
T  1191 ttatagcatttcattaataatcaaacattcaatacaattgggtatatgaaaataaatagcgggactagcgagaaa 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 21021682 - 21021634
Alignment:
Q  87 tttcaatacaataaggtagatgaaaataaatgacgggattagctagaaa 135  Q
    ||||||||||| |||| | |||| |||||||||||||| ||||||||||    
T  21021682 tttcaatacaagaaggcatatgataataaatgacgggactagctagaaa 21021634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University