View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19907_high_12 (Length: 212)

Name: NF19907_high_12
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19907_high_12
NF19907_high_12
[»] chr3 (4 HSPs)
chr3 (1-204)||(1707590-1707793)
chr3 (152-202)||(25727960-25728010)
chr3 (152-204)||(51047162-51047215)
chr3 (152-204)||(7464484-7464536)
[»] chr1 (4 HSPs)
chr1 (152-204)||(32560989-32561041)
chr1 (148-204)||(18166618-18166674)
chr1 (152-202)||(2994776-2994826)
chr1 (152-204)||(14768822-14768875)
[»] chr5 (5 HSPs)
chr5 (152-204)||(19647501-19647553)
chr5 (152-206)||(16575315-16575369)
chr5 (152-204)||(5998961-5999013)
chr5 (152-204)||(10199035-10199087)
chr5 (162-198)||(42964531-42964567)
[»] chr8 (3 HSPs)
chr8 (155-206)||(34461783-34461834)
chr8 (152-204)||(4830024-4830076)
chr8 (152-204)||(16869542-16869594)
[»] chr6 (2 HSPs)
chr6 (162-204)||(10053266-10053308)
chr6 (152-201)||(24623310-24623359)
[»] chr4 (5 HSPs)
chr4 (162-204)||(897441-897483)
chr4 (152-201)||(48159696-48159745)
chr4 (152-204)||(11949756-11949808)
chr4 (152-204)||(14618887-14618939)
chr4 (152-204)||(50380829-50380881)
[»] scaffold0005 (1 HSPs)
scaffold0005 (152-204)||(198438-198490)
[»] chr7 (3 HSPs)
chr7 (152-204)||(19599161-19599213)
chr7 (152-204)||(27833394-27833446)
chr7 (152-204)||(41029288-41029340)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1707590 - 1707793
Alignment:
Q  1 aatgtcatatgtttttacaacttaattatgtttcttaagttatatgaaataatcttaaaagagattcattttaaaatggtggaaataaaatagttctaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  1707590 aatgtcatatgtttttacaacttaattatgtttcttaagttatatgaaataatcttaaaagacattcattttaaaatggtgaaaataaaatagttctaaa 1707689  T
Q  101 ttggtaccnnnnnnnngaatatttcaacccgacataatcannnnnnnggtagtggtcgggatttgaacaccgcactttacatatattatacattgtccat 200  Q
    |||||| |        ||| ||||| ||||||| |||||        ||| ||||||||| ||||||| |||||| |||||||| ||||||||| | |||    
T  1707690 ttggtatcaaaaaaaagaaaatttctacccgacgtaatcttttttttggtggtggtcggggtttgaacgccgcaccttacatattttatacattattcat 1707789  T
Q  201 acca 204  Q
    ||||    
T  1707790 acca 1707793  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 25727960 - 25728010
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatac 202  Q
    ||||||||||||||||| ||| || || |||||||||| ||||||||||||    
T  25727960 gtggtcgggatttgaaccccggaccttgcatatattatgcattgtccatac 25728010  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 51047162 - 51047215
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatat-attatacattgtccatacca 204  Q
    ||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||    
T  51047162 gtggtcggggtttgaaccccggaccttacatattattatacattgtccatacca 51047215  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 7464484 - 7464536
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||| ||||||| ||| || ||||||||||||| |||||||| |||||    
T  7464484 gtggtcggggtttgaaccccggaccttacatatattatgcattgtccctacca 7464536  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 32561041 - 32560989
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||||||||||| ||| || || |||||||||||||||||||||||||    
T  32561041 gtggtcgggatttgaaccccggaccttgcatatattatacattgtccatacca 32560989  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 18166674 - 18166618
Alignment:
Q  148 ggtagtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||||||| ||||||| ||| ||||| |||||||||| ||||||| ||||||    
T  18166674 ggtagtggtcggggtttgaaccccggactttgcatatattatgcattgtctatacca 18166618  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 2994826 - 2994776
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatac 202  Q
    ||||||||| ||||||| ||| || || |||||||||||||||||||||||    
T  2994826 gtggtcggggtttgaaccccggaccttgcatatattatacattgtccatac 2994776  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 14768875 - 14768822
Alignment:
Q  152 gtggtcgggatttgaacaccgca-ctttacatatattatacattgtccatacca 204  Q
    ||||||||| ||||||| ||| | |||||||||||||||||||||||| |||||    
T  14768875 gtggtcggggtttgaaccccgaaactttacatatattatacattgtccctacca 14768822  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 19647501 - 19647553
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||||||||||| ||  || |||||||||||||||||||||| |||||    
T  19647501 gtggtcgggatttgaaccccagaccttacatatattatacattgtccctacca 19647553  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 206
Target Start/End: Original strand, 16575315 - 16575369
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccataccagt 206  Q
    |||||| || ||||||| ||| || |||||||||||||| |||||||||||||||    
T  16575315 gtggtcagggtttgaactccggaccttacatatattatatattgtccataccagt 16575369  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 5999013 - 5998961
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||| || |||||||| ||| ||||| ||||||||||||||||||| |||||    
T  5999013 gtggttggaatttgaaccccgaactttgcatatattatacattgtccctacca 5998961  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 10199087 - 10199035
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    |||||||||||| |||| || ||| ||| ||||||||| ||||||||||||||    
T  10199087 gtggtcgggattcgaaccccacaccttatatatattatgcattgtccatacca 10199035  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 42964567 - 42964531
Alignment:
Q  162 tttgaacaccgcactttacatatattatacattgtcc 198  Q
    ||||||||||| || ||||||||||||||||||||||    
T  42964567 tttgaacaccgaaccttacatatattatacattgtcc 42964531  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 34461783 - 34461834
Alignment:
Q  155 gtcgggatttgaacaccgcactttacatatattatacattgtccataccagt 206  Q
    ||||||||||||||  |  || ||||||||||||||||||||||||||||||    
T  34461783 gtcgggatttgaaccgcagaccttacatatattatacattgtccataccagt 34461834  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 4830076 - 4830024
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    |||||||||||| |||| ||| || || |||||||||| ||||||||||||||    
T  4830076 gtggtcgggattcgaaccccgaaccttgcatatattatgcattgtccatacca 4830024  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 16869594 - 16869542
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    |||| |||||||||||| ||| ||||| || ||||||| ||||||||||||||    
T  16869594 gtggccgggatttgaaccccgaactttgcaaatattatgcattgtccatacca 16869542  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 10053308 - 10053266
Alignment:
Q  162 tttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||| ||| |||||||||||||||| ||||||||||||||    
T  10053308 tttgaactccgaactttacatatattatgcattgtccatacca 10053266  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 24623310 - 24623359
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccata 201  Q
    ||||||||| ||||||| ||| || ||||||||||||| |||||||||||    
T  24623310 gtggtcggggtttgaaccccgaaccttacatatattatgcattgtccata 24623359  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 897483 - 897441
Alignment:
Q  162 tttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||| ||| || ||||||||||||||||||||||||||||    
T  897483 tttgaaccccggaccttacatatattatacattgtccatacca 897441  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 48159745 - 48159696
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccata 201  Q
    |||||||||||||||||  || || ||||||||||||| |||||||||||    
T  48159745 gtggtcgggatttgaacttcgaaccttacatatattatgcattgtccata 48159696  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 11949756 - 11949808
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||| ||||||| ||| || || |||||||||| ||||||||||||||    
T  11949756 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccatacca 11949808  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 14618939 - 14618887
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||| ||||||| ||  ||||||||||||||||||| |||| ||||||    
T  14618939 gtggtcgggttttgaacccctgactttacatatattatacactgtctatacca 14618887  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 50380829 - 50380881
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||| ||||||||| ||| || ||||||||||||| |||||| |||||||    
T  50380829 gtggtcgagatttgaactccggaccttacatatattatgcattgttcatacca 50380881  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 198438 - 198490
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||| ||||||| ||  ||||||||||||||||||| |||| ||||||    
T  198438 gtggtcgggttttgaacccctgactttacatatattatacactgtctatacca 198490  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 19599213 - 19599161
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||| ||||||| ||| || || |||||||||| ||||||||||||||    
T  19599213 gtggtcggggtttgaaccccggaccttgcatatattatgcattgtccatacca 19599161  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 27833394 - 27833446
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    ||||||||| ||||||| ||| || ||||||||||||| |||||||| |||||    
T  27833394 gtggtcggggtttgaaccccggaccttacatatattatgcattgtccttacca 27833446  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 41029340 - 41029288
Alignment:
Q  152 gtggtcgggatttgaacaccgcactttacatatattatacattgtccatacca 204  Q
    |||||||||||| |||| ||| || || ||||||||||||||||||| |||||    
T  41029340 gtggtcgggattcgaaccccggaccttgcatatattatacattgtccttacca 41029288  T

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