View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19907_low_12 (Length: 214)
Name: NF19907_low_12
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19907_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 54 - 197
Target Start/End: Complemental strand, 26598113 - 26597970
Alignment:
| Q |
54 |
ttgtacctagagacttcatcccataaaggacctttttgattagcttctttaaatttagggtcaagacgagatctgatttcaagaagagtaagagtttctt |
153 |
Q |
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| T |
26598113 |
ttgtacctagagacttcatcccataaaggacctttttgattagcttctttaaatttagggtcaagacgagatctgatttcaagaagagtaagagtttctt |
26598014 |
T |
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| Q |
154 |
gtcttggccatcttccggtggatgcatctccacccatataacct |
197 |
Q |
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| T |
26598013 |
gtcttggccatcttccagtggatgcatctccacccatataacct |
26597970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 41606457 - 41606509
Alignment:
| Q |
114 |
tcaagacgagatctgatttcaagaagagtaagagtttcttgtcttggccatct |
166 |
Q |
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| T |
41606457 |
tcaagacgagatctgatttctagaagagaaagagtctcttgtctgggccatct |
41606509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 44
Target Start/End: Complemental strand, 26598168 - 26598138
Alignment:
| Q |
14 |
gaagaaataattacataaataattaggaaag |
44 |
Q |
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| T |
26598168 |
gaagaaataattacataaataattaggaaag |
26598138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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