View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19907_low_2 (Length: 449)
Name: NF19907_low_2
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19907_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Original strand, 14924931 - 14925355
Alignment:
| Q |
11 |
cacagatttgggttgtagagtcagcctcttgcaaatgcaggcttcttgcattatatttgtaatgagtctcgtgtctcttaatttgtaacaataaattggt |
110 |
Q |
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| T |
14924931 |
cacagatttgggttgtagagtcagcctcttgcaaatgcatgcttcttgcattatatttgtaatgagtctcgtgtctcttaatttgtaacaataaattggt |
14925030 |
T |
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| Q |
111 |
gtgtttctagcatgttaccacatgatttattattatgcacacttcatattcaacttcttagcttccctgagcttctttctaatattataaatctgctaca |
210 |
Q |
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| T |
14925031 |
gtgtttctagcatgttaccacatgatttattatcatgcacacttcatattcaacttcttagcttcccttagcttctttctaatattataaatatgctaca |
14925130 |
T |
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| Q |
211 |
ttgccgtttgcggttagattgacttggctgtatgcgtgaaaatcgtaaagtagcaaaccattaggatagatataacagatctctttttactatttgatgt |
310 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14925131 |
ttgccgtttgtggttagattgacttgactgtatgcgtgaaaatcgtaaagtagcaaaccattaggatagatataacaaatctctttttactatttgatgt |
14925230 |
T |
|
| Q |
311 |
catattataaagcaggtttctgttcctcttttttccaatattaaattgttactggtgtttatttagcatgtgaattaatgtgaaattctgtcagtttata |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
14925231 |
catattataaagcaggtttctgttcctcttttttccaatattaaattgttactggtgtttatttagcatgtgagttaatgtgaaattttgtcagtttata |
14925330 |
T |
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| Q |
411 |
tccaaaaatgcaatgtgataaaagt |
435 |
Q |
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| T |
14925331 |
tccaaaaatgcaatgtgataaaagt |
14925355 |
T |
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