View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19907_low_4 (Length: 342)
Name: NF19907_low_4
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19907_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 42070128 - 42069912
Alignment:
| Q |
15 |
caaaggtcactgttaatttcaaaatagagaaaccaattatcaaatccatgaagtgaaaaaagatcaattccacgaagtgaataaatattcaatttgatct |
114 |
Q |
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| T |
42070128 |
caaaggtcactgttaatttcaaaatagagaaaccaattatcaaatccatgaagtgaaaaaagataaattccacgaagtgaataaatattcaatttgatct |
42070029 |
T |
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| Q |
115 |
ttgatatcgtagacctacggaatgnnnnnnntaataatcatcgagtcgtgcaagggtttaggttttcagccataaatggagaaaacaatttaaaagtata |
214 |
Q |
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| T |
42070028 |
ttgatatcgtagaactacggaatgaaaaaaataataatcatcgagtcgtgcaagggtttaggttttcagccataaatggagaaaacaatttaaaagtata |
42069929 |
T |
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| Q |
215 |
catgttttgtattatta |
231 |
Q |
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| T |
42069928 |
catgttttgtattatta |
42069912 |
T |
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