View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19907_low_6 (Length: 302)

Name: NF19907_low_6
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19907_low_6
NF19907_low_6
[»] chr6 (14 HSPs)
chr6 (24-204)||(35167906-35168086)
chr6 (24-288)||(8576504-8576769)
chr6 (24-200)||(34434997-34435173)
chr6 (13-288)||(7622107-7622383)
chr6 (25-271)||(642183-642430)
chr6 (36-199)||(5999308-5999462)
chr6 (25-201)||(28581903-28582081)
chr6 (196-288)||(35167397-35167489)
chr6 (24-122)||(32292657-32292755)
chr6 (229-290)||(34433711-34433772)
chr6 (26-129)||(10788326-10788431)
chr6 (249-288)||(28582121-28582160)
chr6 (31-113)||(10409219-10409301)
chr6 (258-286)||(10788465-10788493)
[»] chr3 (12 HSPs)
chr3 (24-288)||(13825662-13825927)
chr3 (19-284)||(25874819-25875086)
chr3 (24-201)||(48251844-48252021)
chr3 (24-201)||(12148786-12148963)
chr3 (24-288)||(21287869-21288116)
chr3 (19-288)||(27926732-27927002)
chr3 (24-199)||(4127754-4127930)
chr3 (30-201)||(36584156-36584327)
chr3 (29-288)||(5294979-5295227)
chr3 (249-288)||(48251776-48251815)
chr3 (228-284)||(26187881-26187937)
chr3 (147-198)||(26187804-26187855)
[»] chr1 (18 HSPs)
chr1 (24-288)||(31585339-31585604)
chr1 (24-287)||(48379197-48379464)
chr1 (24-288)||(17562892-17563157)
chr1 (24-288)||(47140542-47140805)
chr1 (24-284)||(29678430-29678692)
chr1 (28-288)||(31292863-31293124)
chr1 (49-288)||(36728859-36729100)
chr1 (24-210)||(38264509-38264695)
chr1 (24-158)||(25294164-25294298)
chr1 (24-288)||(19884516-19884780)
chr1 (24-196)||(2191988-2192160)
chr1 (230-288)||(25987349-25987407)
chr1 (134-197)||(15378759-15378822)
chr1 (26-91)||(17145510-17145575)
chr1 (236-288)||(11894257-11894309)
chr1 (25-67)||(15378687-15378729)
chr1 (250-288)||(15378868-15378906)
chr1 (74-199)||(11894106-11894230)
[»] chr8 (11 HSPs)
chr8 (26-277)||(7987347-7987598)
chr8 (24-288)||(36582999-36583263)
chr8 (56-288)||(13355588-13355822)
chr8 (20-201)||(11481183-11481364)
chr8 (42-288)||(7968542-7968790)
chr8 (24-288)||(8227355-8227602)
chr8 (19-201)||(31005765-31005947)
chr8 (233-288)||(9763038-9763093)
chr8 (78-150)||(9765250-9765322)
chr8 (228-288)||(31005964-31006024)
chr8 (258-288)||(11481406-11481436)
[»] chr5 (10 HSPs)
chr5 (24-288)||(23428988-23429253)
chr5 (19-201)||(39800601-39800783)
chr5 (24-201)||(40056737-40056914)
chr5 (16-288)||(33742826-33743094)
chr5 (25-288)||(35188704-35188969)
chr5 (36-288)||(42836748-42836999)
chr5 (24-288)||(39207228-39207472)
chr5 (24-288)||(3925967-3926213)
chr5 (24-288)||(2209291-2209553)
chr5 (72-199)||(42879087-42879214)
[»] chr4 (20 HSPs)
chr4 (24-287)||(41039087-41039353)
chr4 (24-288)||(38951375-38951641)
chr4 (24-194)||(23626609-23626779)
chr4 (24-288)||(22278064-22278333)
chr4 (29-201)||(40572091-40572261)
chr4 (25-201)||(8819499-8819674)
chr4 (24-288)||(51356936-51357189)
chr4 (24-288)||(19841498-19841761)
chr4 (228-288)||(43624371-43624433)
chr4 (230-288)||(29116983-29117041)
chr4 (15-199)||(42555076-42555251)
chr4 (143-284)||(40714966-40715109)
chr4 (233-288)||(8819422-8819477)
chr4 (233-288)||(17120393-17120448)
chr4 (228-287)||(36464935-36464994)
chr4 (24-198)||(36465014-36465187)
chr4 (24-141)||(47223059-47223176)
chr4 (24-65)||(42595842-42595883)
chr4 (24-88)||(18903305-18903369)
chr4 (228-288)||(42555272-42555332)
[»] chr2 (12 HSPs)
chr2 (19-288)||(5938484-5938747)
chr2 (73-288)||(5704406-5704622)
chr2 (59-288)||(31576052-31576286)
chr2 (24-201)||(42625212-42625388)
chr2 (24-288)||(5109962-5110227)
chr2 (30-272)||(13626421-13626665)
chr2 (25-288)||(45151349-45151595)
chr2 (24-142)||(13807326-13807444)
chr2 (228-288)||(13807504-13807564)
chr2 (165-201)||(45458581-45458617)
chr2 (24-86)||(42604219-42604281)
chr2 (30-123)||(31604592-31604685)
[»] chr7 (19 HSPs)
chr7 (24-287)||(23809787-23810052)
chr7 (24-288)||(38440552-38440815)
chr7 (24-288)||(11039297-11039561)
chr7 (24-284)||(25501897-25502156)
chr7 (21-287)||(7766811-7767082)
chr7 (24-201)||(27336696-27336873)
chr7 (24-288)||(33189147-33189411)
chr7 (25-201)||(2944266-2944442)
chr7 (28-288)||(30541597-30541854)
chr7 (24-201)||(22519388-22519565)
chr7 (24-288)||(5972734-5972980)
chr7 (29-216)||(36298538-36298724)
chr7 (228-285)||(40910606-40910663)
chr7 (26-113)||(1053365-1053453)
chr7 (228-288)||(15954745-15954805)
chr7 (241-288)||(31457228-31457275)
chr7 (231-284)||(2944190-2944243)
chr7 (163-202)||(15954827-15954866)
chr7 (163-199)||(31457194-31457230)
[»] scaffold0115 (1 HSPs)
scaffold0115 (24-201)||(21818-21995)
[»] scaffold0691 (1 HSPs)
scaffold0691 (24-201)||(7671-7848)
[»] scaffold0057 (1 HSPs)
scaffold0057 (24-211)||(66351-66538)
[»] scaffold0155 (1 HSPs)
scaffold0155 (26-288)||(6999-7248)
[»] scaffold0246 (1 HSPs)
scaffold0246 (78-182)||(10735-10839)
[»] scaffold0041 (1 HSPs)
scaffold0041 (228-285)||(62431-62488)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 204
Target Start/End: Complemental strand, 35168086 - 35167906
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  35168086 ggatgtaaatggatatccatggatgcgaatagtatgatatccgtatccactccattagataaatataaaatccgtaccctattcatatccgtgcggatat 35167987  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaatta 204  Q
     |||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  35167986 ccgtttcgcgggtaatccgtggattttgaggtatccgcgggtttatacagatatccatggataacatttataaaaaaatta 35167906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 8576504 - 8576769
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||  ||| ||| |||||||| |||| ||||| |||| |||||||| || |||||    
T  8576504 ggatgtaaatggatatccatggatgcggatagtgtgatatccgtgtccgttccgttaaataaatatgaaatccgtactctatccatatccgcgcggatat 8576603  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     | ||| ||  ||||||||  |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |  || |||||||||||||        
T  8576604 ccatttagcgagtaatccgccgattttgaggtatccgcgggtttatacagatatccatggataacatttataaaaataaaataaaaaatttgtttacctt 8576703  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  8576704 ttattagctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 8576769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 34435173 - 34434997
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||   ||||||||  |||||||||| | |||    
T  34435173 ggatgtaaatggatattcatggatgcggatagtgtgatatccgtatccgctccattagataaatatgaaatctctaccctatctatatccgtgcgggtat 34435074  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaa 200  Q
     ||||| || |||||| |||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||    
T  34435073 ccgtttagcgggtaattcgtggattttgaggtatccgttggtttatacagatatccatggataacatttataaaaaa 34434997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 7622107 - 7622383
Alignment:
Q  13 atcatcagtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatc 112  Q
    ||||| |||| |||||||||||||||||||  ||| | |||||||||||||| || |||  ||| ||  |||||||| ||||  ||||| ||| ||||||    
T  7622107 atcataagtagggatgtaaatggatatccacagatgcagatagtgtgatatctgtgtccgttccgttgaataaatatgaaatctgtaccttatccatatc 7622206  T
Q  113 cgtgctgatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaat 211  Q
    || |  ||||| | ||| || | |||||||||||||||||| |||| ||||||||||||| |||| ||||||||||||||||||||| |  || ||||||    
T  7622207 cgcgtggatatccatttagcggataatccgtggattttgagttatccgcgggtttatacagatattcatggataacatttataaaaataaaataaaaaat 7622306  T
Q  212 ttgtttannnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||         |||||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||    
T  7622307 ttgtttaattttctttagctaaaatttagaaacagaggttcttcacatgcattttcttttctttttagcaaaacata 7622383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 271
Target Start/End: Complemental strand, 642430 - 642183
Alignment:
Q  25 gatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatatt 124  Q
    |||||||||||||||||| |||| |||||||||| ||||||  ||||  ||| ||| | |||||| |||| ||||| ||||  |||||||||| |||||     
T  642430 gatgtaaatggatatccaaggatgcggatagtgtaatatcctcatccgttccgttaaaaaaatatgaaatccgtactctatcaatatccgtgcggatatc 642331  T
Q  125 cgtttcgcaggtaatccgtggattttgaggtatctgcgggtt--tatacatatatccatggataacatttat-aaaaaaattataaaaatttgtttannn 221  Q
    ||||| |||||||||||| |||||||||||||||||  | ||  ||||||||||||||| |||||||||||| ||||||| || |||||||||||||       
T  642330 cgtttagcaggtaatccgcggattttgaggtatctgtagatttatatacatatatccattgataacatttataaaaaaaaataaaaaaatttgttta-ta 642232  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttctttt 271  Q
          |||||||||||||||||||||  |||||| ||||||||||||||    
T  642231 ttttttagctaaaatttagaaacaaag-gtcatcacatgcattttctttt 642183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 199
Target Start/End: Original strand, 5999308 - 5999462
Alignment:
Q  36 atatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcagg 135  Q
    |||||||||||| ||||||||||||||||||| ||| |||| |||||||||||| |||| |||||||||| |||||||| || |||||        |||     
T  5999308 atatccatggatgcggatagtgtgatatccgtgtccgctccgttagataaatatgaaatccgtaccctatccatatccgcgcggatat--------cag- 5999398  T
Q  136 taatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaa 199  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5999399 taatccgcggattttgaggtatctgcgggtttatacagatatccatggataacatttataaaaa 5999462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 28581903 - 28582081
Alignment:
Q  25 gatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatatt 124  Q
    |||||||||||||||||||||||  |||||||||||||||| | ||  |||| |||||||||||| |||| | ||||||||||||||||| || |||||     
T  28581903 gatgtaaatggatatccatggatgtggatagtgtgatatccatgtctgctccgttagataaatatgaaatccataccctattcatatccgcgcggatatc 28582002  T
Q  125 cgtttcgcaggtaatccgtggattttgaggtatctgcgggtt--tatacatatatccatggataacatttataaaaaaa 201  Q
    ||||| || ||||||||    |||| |||||||| |||||||  |||||| ||||||||||||||||||||||||||||    
T  28582003 cgtttagcgggtaatccacatatttagaggtatccgcgggtttatatacagatatccatggataacatttataaaaaaa 28582081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 35167489 - 35167397
Alignment:
Q  196 aaaaaattataaaaatttgtttannnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||||||||||||||||||         |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35167489 aaaaaattataaaaatttgtttatttttttttagctaaaagttagaaacaaaggttcatcatatgcattttcttttctttttagcaaaacata 35167397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 32292755 - 32292657
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgata 122  Q
    ||||||||||||||||| |||||| |||||||| |||||||||| ||| |||| || ||||||||| |||| | |||||||| ||||||||||| ||||    
T  32292755 ggatgtaaatggatatcgatggatgcggatagtatgatatccgtgtccgctccgttggataaatatgaaatccataccctatccatatccgtgcggata 32292657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 34433772 - 34433711
Alignment:
Q  229 gctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacatatt 290  Q
    |||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||    
T  34433772 gctaaaatttagaaacaaatgttcatcatatgcgttttcttttctttttagcaaaacatatt 34433711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 10788326 - 10788431
Alignment:
Q  26 atgtaaatggatatccatggatacggatagtgtgatatcc--gtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||| |||| || |||||||||||||||||  || ||| |||| ||||||||| || |||| | |||||||| |||||||| || |||||    
T  10788326 atgtaaatggatattcatgtatgcggatagtgtgatatccgtgtgtccgctccgttagataaacatgaaatccataccctatccatatccgcgcggatat 10788425  T
Q  124 tcgttt 129  Q
     |||||    
T  10788426 ccgttt 10788431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Original strand, 28582121 - 28582160
Alignment:
Q  249 attcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  28582121 attcatcacatgcattttcttttctttttagcaaaacata 28582160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 10409301 - 10409219
Alignment:
Q  31 aatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatcc 113  Q
    ||||||||| |||||||   |||||||||||||  || | | |||| || |||||||||||||| |||||||||| |||||||    
T  10409301 aatggatattcatggatgatgatagtgtgatatatgtgttcgctccgttggataaatataaaatccgtaccctatccatatcc 10409219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 10788465 - 10788493
Alignment:
Q  258 atgcattttcttttctttttagcaaaaca 286  Q
    |||||||||||||||||||||||||||||    
T  10788465 atgcattttcttttctttttagcaaaaca 10788493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 5e-62; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 13825662 - 13825927
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||||||||||||||  || ||| |||| |||||||||||| |||| |||||||||| |||||||| || |||||    
T  13825662 ggatgtaaatggatatccatggatgcggatagtgtgatatatgtgtccgctccgttagataaatatgaaatccgtaccctatccatatccgcgcggatat 13825761  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaa--aaattataaaaatttgtttannn 221  Q
     | ||| || ||||||| | |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||  |||||| |||||||||||||       
T  13825762 ccatttagcgggtaatctgcggattttgagatatctgcaggtttatacagatatccatggataacatttataaaaataaatta-aaaaatttgtttaatt 13825860  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
          ||||||||||||||||||||| ||| | |||||||||||||||| ||||||| ||||||||    
T  13825861 ttttttagctaaaatttagaaacaaaggttcttgatatgcattttcttttatttttagtaaaacata 13825927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 25875086 - 25874819
Alignment:
Q  19 agtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgct 118  Q
    |||| |||||||||||||||| |||||||  |||||||||||||||||| ||| |||| ||||||||| || |||| |||||||||| |||||||| ||     
T  25875086 agtagggatgtaaatggatatacatggatgtggatagtgtgatatccgtgtccgctccgttagataaagatgaaatccgtaccctatccatatccgcgca 25874987  T
Q  119 gatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgttt 217  Q
     |||| ||||| || ||||||||| ||||||||||||||| | ||||||||||| ||||||||||||||| |||||||||| |  || ||||||||||||    
T  25874986 aatatccgtttagcgggtaatccgcggattttgaggtatccgtgggtttatacagatatccatggataacgtttataaaaataaaataaaaaatttgttt 25874887  T
Q  218 -annnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaa 284  Q
     |         ||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  25874886 aagtattttttagctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttaacaaaa 25874819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 48252021 - 48251844
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||||||| ||  |||||||||||||||| |||||  ||| || ||||||||| |||||||||||||||  ||||||  |  |||||    
T  48252021 ggatgtaaatggatatccatgaatgtggatagtgtgatatccatatccgttccgttggataaatatgaaattcgtaccctatcgatatccacgtggatat 48251922  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
     ||||| |||||||||||  | |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  48251921 ccgtttagcaggtaatccacgaattttgaggtatctactggtttatacatatatccatgaataacatttataaaaaaa 48251844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 12148786 - 12148963
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||| ||||||| ||| |||||    
T  12148786 ggatgtaaatcgatatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatccatgcggatat 12148885  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
     | ||| || | |||||  ||||||||||||||||  ||  |||||||  |||||||||||||||||| |||| ||||    
T  12148886 ccatttagcggataatcaatggattttgaggtatccacgaatttatacggatatccatggataacattcataagaaaa 12148963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 21287869 - 21288116
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| | |||||||||||||| || ||| |||| |||||||||||| |||| |||||||||| ||||| ||||| |||||    
T  21287869 ggatgtaaatggatatccatggatgcagatagtgtgatatctgtgtcccctccgttagataaatatgaaatccgtaccctatccatattcgtgcagatat 21287968  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     ||||| ||| |  ||||                  ||||||||||||| |||||||||||||||||||||||||| |  || |||||||||||||        
T  21287969 ccgtttagcatgcgatcc------------------gcgggtttatacagatatccatggataacatttataaaaataaaataaaaaatttgtttaattt 21288050  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         ||||||||||||||||||||| ||| ||| |||||||||||||||| |||||| |||||||    
T  21288051 tttttagctaaaatttagaaacaaaggttcttcacatgcattttcttttctctttagcgaaacata 21288116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 27927002 - 27926732
Alignment:
Q  19 agtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgct 118  Q
    |||| |||| ||||||||||| |||||||   |||||||| |||||||| ||| |||| |||||||||||| ||||  |||| ||||  |||||    |     
T  27927002 agtagggatataaatggatattcatggatgtagatagtgtcatatccgtgtccgctccgttagataaatatgaaatatgtactctatctatatcgacacg 27926903  T
Q  119 gatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaa-tttgttt 217  Q
    | ||| |||||  | |||||| | | ||||||||| || | ||| ||||||||| ||||| |||||||||||||||||||| |  ||||||| |||||||    
T  27926902 gttatccgtttaacgggtaatgcatagattttgagctacccgcgagtttatacagatatcgatggataacatttataaaaataaaataaaaaatttgttt 27926803  T
Q  218 annnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |         ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  27926802 aatttgttttagctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 27926732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 4127754 - 4127930
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||  ||| || ||||||||| |||| || ||||||| ||||| |  ||  ||||    
T  4127754 ggatgtaaatggatatccatggatgcggatagtgtgatatccgtgtccgttccgttggataaatatgaaatccgaaccctatccatattcacgcatatat 4127853  T
Q  124 tcg-tttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaa 199  Q
        ||| |  ||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4127854 caaatttagggggtaatccacagattttgaggtatccgcgggtttatacatatatccatggataacatttataaaaa 4127930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 36584156 - 36584327
Alignment:
Q  30 aaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgttt 129  Q
    |||||||||||||||||| | |||||| ||||||| |||||  ||||||| ||||||||| |||||| | | ||||||||||||| || ||||| | |||    
T  36584156 aaatggatatccatggatgcagatagtatgatatctgtatctgctccattggataaatatgaaattcatgctctattcatatccgcgcggatatccattt 36584255  T
Q  130 cgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
      | | ||||||  | |||||||||||| |||| ||||||||| ||||| ||| ||||| ||||||||||||    
T  36584256 aacggataatccacgaattttgaggtatttgcgagtttatacaaatatctatgaataacttttataaaaaaa 36584327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 5294979 - 5295227
Alignment:
Q  29 taaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtt 128  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||| |||| |||||||||||| ||||       ||    ||||||     ||||| ||||    
T  5294979 taaatggatattcatggatgcggatagtgtgatatccgtgtcccctccgttagataaatatgaaat-------ct----atatcctcatggatatccgtt 5295067  T
Q  129 tcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatt-tataaaaaaattataaaaatttgtttannnnnnnnn 227  Q
    |   || ||||| | | |||||||||||||  |||||||||| | ||||||||| |||| ||| || ||| ||| || |||||||||||||             
T  5295068 taatagataatctgcgaattttgaggtatccacgggtttatatagatatccatgaataatattataaaaataaaata-aaaaatttgtttaatttttttt 5295166  T
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||||||||||||||||  ||| ||| || ||||||||||||||||||||||||||||    
T  5295167 agctaaaatttagaaacaaaagttcttcacatacattttcttttctttttagcaaaacata 5295227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 288
Target Start/End: Complemental strand, 48251815 - 48251776
Alignment:
Q  249 attcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  48251815 attcatcacatgcattttcttttctttttagcaaaacata 48251776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 26187881 - 26187937
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaa 284  Q
    |||| ||||||| ||||||| |||||||| ||||||||||| |||||||| ||||||    
T  26187881 agctgaaatttaaaaacaaaaattcatcacatgcattttctattctttttcgcaaaa 26187937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 26187804 - 26187855
Alignment:
Q  147 ttttgaggtatctgcgggtttatacatatatccatggataacatttataaaa 198  Q
    |||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||    
T  26187804 ttttgaggtatccgcgagtttatacagatattcatggataatatttataaaa 26187855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 31585604 - 31585339
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||||||||| |||||| | ||| |||| ||||||||||||||||| |||||||||| ||||||   || |||||    
T  31585604 ggatgtaaatggatatccatggatgcggatagtgtaatatccttgtccgctccgttagataaatataaaatccgtaccctatccatatcaacgcggatat 31585505  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     ||||| || |||||||||  |||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||| |  || |||||||||||||        
T  31585504 ccgtttagcgggtaatccgcagattttgaagtatccgcgggtttatacagatattcatggataacatttataaaaataaaataaaaaatttgtttacttt 31585405  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         |||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||    
T  31585404 tttttagctaaaatttagaaacaaagagtattcacatgcattttcttttctttttagcaaaacata 31585339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 48379464 - 48379197
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||||||||||| |||||| ||| |||| |||||||||||| |||| |||||| ||| ||||||||||| |||||    
T  48379464 ggatgtaaatggatatccatggatgcggatagtgtgaaatccgtgtccgctccgttagataaatatgaaatccgtaccatatccatatccgtgcggatat 48379365  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaa-atttgtt---tan 219  Q
       ||| |||||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| |  ||||||  ||||||   |      
T  48379364 caatttagcaggtaatccgcggatttttaggtatccgcgggtttatacagatatccatggataacatttataaaaataaaataaaatttttgtttgattt 48379265  T
Q  220 nnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacat 287  Q
            ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  48379264 ttttttttagctaaaatttagaaacaaaggttcttcatatgtattttcttttctttttagcaaaacat 48379197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 17563157 - 17562892
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||||||||| |||||  | ||| |||  ||||||||||||||||| | |||||||| ||||||   || || ||    
T  17563157 ggatgtaaatggatatccatggatgcggatagtgtaatatctttgtccgctctgttagataaatataaaatccataccctatccatatcaacgcggacat 17563058  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     ||||| || |||||||||  |||||||| ||||| ||||||||||||| |||| ||||||||||||||||||||| |  || |||||||||||||        
T  17563057 ccgtttagcgggtaatccgcagattttgaagtatccgcgggtttatacagatattcatggataacatttataaaaataaaataaaaaatttgtttacttt 17562958  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         |||||||||||||||||||||| |  ||| |||||||||||||||||||||||||||||||    
T  17562957 tttttagctaaaatttagaaacaaagagtattcacatgcattttcttttctttttagcaaaacata 17562892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 47140542 - 47140805
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||| ||||||||||||| ||||||||||||||| ||| ||| |||| || ||||||||| |||| | || | |||  ||||||| || |||||    
T  47140542 ggatgtaaatagatatccatggatgcggatagtgtgatattcgtgtccgctccgttggataaatatgaaatccatatcttatctatatccgcgcggatat 47140641  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgttt--annn 221  Q
    |||||| || ||||||||| ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||   || || ||||| |||  |       
T  47140642 tcgtttagcgggtaatccgcggattttgaggtatccgcgggtttgtacagatatccatggataacatttataaaaa---taaaataatttttttaaattt 47140738  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
          ||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||    
T  47140739 ttttttagctaaaatttagaaacaaaggttcttcacatgcattttcttttcattttagcaaaacata 47140805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 29678692 - 29678430
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||| ||| | |||||| ||||||  || ||| |||| || ||||||||| |||| | |||||||| |||||||| || |||||    
T  29678692 ggatgtaaatggatatccattgatgcagatagtatgatatatgtgtccgctccgttggataaatatgaaatccataccctatccatatccgcgcggatat 29678593  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaa--aaattataaaaatttgtttannn 221  Q
     |||||    ||||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||||||||  ||| || |||||||||||||       
T  29678592 ccgtttaatgggtaatccgcggattttgaggtatccacgggtttatacagatatccatggataacatttataaaaataaaataaaaaaatttgtttaatt 29678493  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaa 284  Q
          ||||||||||||||||||||  ||| ||| |||||||||||||||||||||| ||||    
T  29678492 ttttttagctaaaatttagaaacaaaagttcttcacatgcattttcttttctttttagtaaaa 29678430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 28 - 288
Target Start/End: Complemental strand, 31293124 - 31292863
Alignment:
Q  28 gtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgt 127  Q
    ||||||| ||||| |||||| |||||| ||||||||   ||||| |||| |||||||||||| |||| || | ||||| |||||| |||| ||||| | |    
T  31293124 gtaaatgaatatctatggatgcggataatgtgatatttatatccgctccgttagataaatatgaaatccgcagcctatccatatctgtgcggatatccat 31293025  T
Q  128 ttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnnnnnn 226  Q
    || || | |||||| |||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||| |  || |||||||||||||            
T  31293024 ttagcggataatccatggatttttaggtatccgcggatttatacagatatccatggataacatttataaaaataaaataaaaaatttgtttaattttttt 31292925  T
Q  227 nagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
     | |||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  31292924 taactaaaatttaaaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 31292863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 49 - 288
Target Start/End: Complemental strand, 36729100 - 36728859
Alignment:
Q  49 cggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggatt 148  Q
    ||||||||||||||||||| |||  ||| || ||||||||| |||||||||||||||  |||||||||| ||||| ||||| || |||| |||| |||||    
T  36729100 cggatagtgtgatatccgtgtccgatccgttggataaatatgaaattcgtaccctatcaatatccgtgcggatatccgtttagcgggtagtccgcggatt 36729001  T
Q  149 ttgaggtatctgcgggtttatacatatatccatggataacatttataaaa--aaattataaaaatttgtttannnnnnnnnagctaaaatttagaaacaa 246  Q
    ||||  |||| || |||| ||||| |||| ||||||||||||||||||||  ||| || |||||||||||||         | || ||||||||||||||    
T  36729000 ttgacatatccgcaggttcatacaaatattcatggataacatttataaaaataaaataaaaaaatttgtttaattttttttaactgaaatttagaaacaa 36728901  T
Q  247 agattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |  ||| ||| |||||||||||||||||||||||||||||||    
T  36728900 atgttcttcacatgcattttcttttctttttagcaaaacata 36728859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 38264695 - 38264509
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||| |||||||||||||| ||||||||  || |||  ||| ||||| |||||| |||| ||| |||||| |||||||| || |||||    
T  38264695 ggatgtaaatggatattcatggatacggatactgtgatatatgtgtccgttccgttagacaaatatgaaatccgtgccctatccatatccgcgcagatat 38264596  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaa 210  Q
     ||||| || ||||||||  | ||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||| || |||||    
T  38264595 ccgtttagccggtaatccacgaattttgaagtatccgcgggtttatacagatatccatggataacatttattaaaaaaataaaaaaa 38264509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 25294298 - 25294164
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||  ||||||||| ||||||| ||| |||||    
T  25294298 ggatgtaaatggatatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatctgtaccctatccatatccatgcggatat 25294199  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatc 158  Q
     | ||| || | |||||| ||||||||||| ||||    
T  25294198 ccatttagcggataatccatggattttgagatatc 25294164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 19884780 - 19884516
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||| ||||||| |||||||||||||||| || ||| |||| || || |||||| |||||| | ||||||  |||||||  |  ||||    
T  19884780 ggatgtaaatggatattcatggatgcggatagtgtgatatctgtgtccgctccgttggacaaatatgaaattcatgccctatctatatccgcacgaatat 19884681  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaa-aaaattataaaaatttgtttannnn 222  Q
    || |||  | || |||||  | ||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||| ||||| ||| |||        
T  19884680 tcatttaacggggaatccacgaattttgaggtatccgcgggtttatatagatatccatggataacatttataaaaaaaattaaaaaaaattg-ttaattt 19884582  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         |||| ||||||| || | ||  |||||||  ||| ||||||||||||||||||||||||||    
T  19884581 ttttgagctgaaatttaaaacccaaagttcatcacgtgcgttttcttttctttttagcaaaacata 19884516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 2192160 - 2191988
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||| ||||||||| |||||| |||||||||||| ||| |||||||||| |||||| ||||   |  ||||| |||||||| ||  | ||    
T  2192160 ggatgtaaatggatgtccatggatgcggataatgtgatatccgtgtccgctccattagacaaatatgaaatctatgtcctatccatatccgcgcgaacat 2192061  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataa 196  Q
     | ||| |||| ||||||   |||||||||||||||||| ||||||||| ||||||||| |||  ||||||||    
T  2192060 ccatttagcagataatccacagattttgaggtatctgcgagtttatacagatatccatgaatactatttataa 2191988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 25987349 - 25987407
Alignment:
Q  230 ctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  25987349 ctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 25987407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 134 - 197
Target Start/End: Original strand, 15378759 - 15378822
Alignment:
Q  134 ggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaa 197  Q
    |||||||| ||||||||||||||||  ||| |||||||| ||||||||||||||||||||||||    
T  15378759 ggtaatccatggattttgaggtatcaacggatttatacaaatatccatggataacatttataaa 15378822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 17145575 - 17145510
Alignment:
Q  26 atgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataa 91  Q
    |||| ||||||||||||||| |||||||||| ||||| |||| ||| |||| ||||||||||||||    
T  17145575 atgtcaatggatatccatgggtacggatagtatgatacccgtctccgctccgttagataaatataa 17145510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 11894257 - 11894309
Alignment:
Q  236 tttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||| |||||| ||| ||||||||||||||||||||||||| |||||||||    
T  11894257 tttagagacaaaggttcttcatatgcattttcttttctttttaacaaaacata 11894309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 15378687 - 15378729
Alignment:
Q  25 gatgtaaatggatatccatggatacggatagtgtgatatccgt 67  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  15378687 gatgtaaatggatatccgtggatgcggatagtgtgatatccgt 15378729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 288
Target Start/End: Original strand, 15378868 - 15378906
Alignment:
Q  250 ttcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  15378868 ttcatcacatgcattttcttttctttttagcaaaacata 15378906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 199
Target Start/End: Original strand, 11894106 - 11894230
Alignment:
Q  74 tccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacat 173  Q
    |||||| ||||||||| ||||  ||||| |||||||||| || | |||||  |||| || ||||||||   ||||||||| ||| || | ||||||| ||    
T  11894106 tccattggataaatatgaaatctgtaccatattcatatc-gtacggatatctgtttagcgggtaatccacagattttgagatatttgagtgtttatagat 11894204  T
Q  174 atatccatggataacatttataaaaa 199  Q
    |||| ||| |||||||||||||||||    
T  11894205 atattcattgataacatttataaaaa 11894230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 26 - 277
Target Start/End: Complemental strand, 7987598 - 7987347
Alignment:
Q  26 atgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattc 125  Q
    |||||||||||||||||||||| | |||| ||||||||| || ||| |||| || ||||||||| |||| |||||||||| ||||||||||| ||||| |    
T  7987598 atgtaaatggatatccatggatgcagatattgtgatatctgtgtccgctccgttggataaatatgaaatccgtaccctatccatatccgtgcggatatcc 7987499  T
Q  126 gtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaa-atttgtttannnnnn 224  Q
    |||| || ||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |  |||||| |||||||||          
T  7987498 gtttagcgggtaatctgcggattttgaggtatctgcgggtttatacagatatccatggataacatttataaaaataaaataaaacatttgttta-atttt 7987400  T
Q  225 nnnagctaaaatttagaaacaaagattcatcatatgcattttcttttcttttt 277  Q
       ||||||||||||||||||||| ||| ||| || |||||||||||||||||    
T  7987399 tttagctaaaatttagaaacaaaggttcttcacatccattttcttttcttttt 7987347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 36583263 - 36582999
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| || ||||| |||||||||| |||  ||| |||||||||||| |||| ||||||||||||||||||| || |||||    
T  36583263 ggatgtaaatggatatccatggatgcgtatagtatgatatccgtgtccgttccgttagataaatatgaaatccgtaccctattcatatccgcgcggatat 36583164  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtttannnnn 223  Q
     |||||  | ||||||||   |||||||||||||| ||| ||||||| | ||||||||||||||||||||| |||| |  ||||||| ||  ||          
T  36583163 ccgtttaacgggtaatccacagattttgaggtatcagcgagtttatatagatatccatggataacatttatgaaaataaaataaaaaatttgttcaattt 36583064  T
Q  224 nnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
        |||||||||||||||| |||| ||| ||| |||||||||||||||||||||||||||||||    
T  36583063 tgttagctaaaatttagaaataaaggttcttcacatgcattttcttttctttttagcaaaacata 36582999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 56 - 288
Target Start/End: Original strand, 13355588 - 13355822
Alignment:
Q  56 tgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggattttgaggt 155  Q
    |||||||||| |||||  |||||||||||||||| |||| ||||||||||  |||| ||||  ||||| ||||| |||||||||||||||||||||||||    
T  13355588 tgtgatatccatatccgttccattagataaatatgaaatacgtaccctatctatattcgtgtggatatccgtttagcaggtaatccgtggattttgaggt 13355687  T
Q  156 atctgcgggtttatacatatatccatggataacatttataaaaaaattat--aaaaatttgtttannnnnnnnnagctaaaatttagaaacaaagattca 253  Q
    ||| | ||||||||||| ||||| |  ||||||||||||||     || |  ||| |||||||||         ||||||||||||||||||||| ||||    
T  13355688 atccgtgggtttatacagatatcgaaagataacatttataattttttttttaaaagatttgtttatttttttttagctaaaatttagaaacaaaggttca 13355787  T
Q  254 tcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||||||||||||||||||||||||||||||    
T  13355788 tcatatgcattttcttttctttttagcaaaacata 13355822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 11481183 - 11481364
Alignment:
Q  20 gtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctg 119  Q
    |||||||||||||||||||||||| ||| |||||||||||||||  || ||| ||||| ||||||||||| ||||||||| ||||| ||||||||||| |    
T  11481183 gtatggatgtaaatggatatccatagatgcggatagtgtgatatttgtgtccgctccaatagataaatatgaaattcgtatcctatccatatccgtgcgg 11481282  T
Q  120 atattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
    |||||| ||| ||   ||||||| ||||||| || ||| || ||||||||||| |||| |||||||||||||||||||||||    
T  11481283 atattcatttagccaataatccgcggatttttagatatatgtgggtttatacagatattcatggataacatttataaaaaaa 11481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 42 - 288
Target Start/End: Complemental strand, 7968790 - 7968542
Alignment:
Q  42 atggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatcc 141  Q
    |||||| | ||||||||||||||||| ||| |||| || ||||||||| |||| |||||||||| ||||||||||| ||||| ||||| || ||||||||    
T  7968790 atggatgcagatagtgtgatatccgtgtccgctccgttggataaatatgaaatccgtaccctatccatatccgtgcggatatccgtttagcgggtaatcc 7968691  T
Q  142 gtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnnnnnnnagctaaaatttag 240  Q
    | |||||||||||||||  ||||||||||||||||||||| ||| ||||||||||||| |  || ||||||||| |||         ||||||| |||||    
T  7968690 gcggattttgaggtatccacgggtttatacatatatccatagatgacatttataaaaataaaataaaaaatttgctta-atttttttagctaaattttag 7968592  T
Q  241 aaacaaagattcatcatatgcattttcttttc--tttttagcaaaacata 288  Q
    |||||||| ||| ||| || ||||| ||||||  ||||||||||||||||    
T  7968591 aaacaaaggttcttcacatccatttacttttctttttttagcaaaacata 7968542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 8227602 - 8227355
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||||||||||  |||||||||||||||||| ||| |||| |||||||||||| |||| ||||| |||| ||||||| ||| |||||    
T  8227602 ggatgtaaatggatatccatggatgtggatagtgtgatatccgtgtccgctccgttagataaatatgaaatccgtactctatccatatccatgcggatat 8227503  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     | ||| || ||||||||||                  |||||||||||||||||||||||||||||||||||||| |  || |||||||||||||        
T  8227502 ccatttagcgggtaatccgt------------------gggtttatacatatatccatggataacatttataaaaataaaataaaaaatttgtttaattt 8227421  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         ||||||||||||||||||||  ||| ||| | ||||||||||||||  |||||||||||||    
T  8227420 tttttagctaaaatttagaaacaaaagttcttcacacgcattttcttttctacttagcaaaacata 8227355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 201
Target Start/End: Original strand, 31005765 - 31005947
Alignment:
Q  19 agtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgct 118  Q
    |||| ||||||||||| |||||||||||| | ||||||||||||||||| ||| |||| || || |||||| |||| ||| |||||| ||||| || ||     
T  31005765 agtagggatgtaaatgtatatccatggatgcagatagtgtgatatccgtgtccgctccgttggacaaatatgaaatccgtgccctatccatattcgcgcg 31005864  T
Q  119 gatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
    ||||| ||||| || | ||||||  |||||||||||||||||||| |||||| | || || ||||||||||||||| ||||||    
T  31005865 gatatccgtttagcggataatccacggattttgaggtatctgcggatttataaagatctctatggataacatttattaaaaaa 31005947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 9763093 - 9763038
Alignment:
Q  233 aaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||    
T  9763093 aaatttagaaacaaaggttcttcacatgcattttcttttatttttagcaaaacata 9763038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 9765322 - 9765250
Alignment:
Q  78 ttagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggatttt 150  Q
    |||||||||||| |||| |||||||||| |||||||| |  ||||| | ||| || |||||||||||||||||    
T  9765322 ttagataaatattaaatccgtaccctatccatatccgcgtggatatccatttagcgggtaatccgtggatttt 9765250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 31005964 - 31006024
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||| ||||||| |||||||  ||||| | ||||||||||| |||||||||||||||||||    
T  31005964 agctgaaatttaaaaacaaaagttcattacatgcattttctattctttttagcaaaacata 31006024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 11481406 - 11481436
Alignment:
Q  258 atgcattttcttttctttttagcaaaacata 288  Q
    |||||||||||||||||||||||||||||||    
T  11481406 atgcattttcttttctttttagcaaaacata 11481436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 23428988 - 23429253
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||| ||||| ||||||| ||||||||||||||||| | ||  ||||  ||||||||||| |||| |||||||||| ||||||||||| |||||    
T  23428988 ggatgtaaatagatattcatggatgcggatagtgtgatatccttgtctgctccgatagataaatatgaaatccgtaccctatccatatccgtgcggatat 23429087  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     | ||| || || |||||  ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |  || |||||||||||||        
T  23429088 ccatttagcgggcaatccacggatttttaggtatccgcgagtttatacatatatccatggataacatttataaaaataaaataaaaaatttgtttaattg 23429187  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
          |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  23429188 ttttttgctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 23429253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 19 - 201
Target Start/End: Complemental strand, 39800783 - 39800601
Alignment:
Q  19 agtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgct 118  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||||| |||     
T  39800783 agtagggatgtaaatggatatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatataaaatccgtaccctatccatatccatgca 39800684  T
Q  119 gatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
    ||||| | ||| || | |||||| ||||||||||||||||  ||| |||||||  |||||||||||||||||| |||| ||||    
T  39800683 gatatccatttagcggataatccatggattttgaggtatccacggatttatacggatatccatggataacattcataagaaaa 39800601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 40056737 - 40056914
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| ||||||| ||| |||||    
T  40056737 ggatgtaaatggatatccatggatgcggatagtgtgatatccgtttccactccgttagataaatatgaaattcgtaccctatccatatccatgcggatat 40056836  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
     | ||| || | |||||| ||||||||||||||||  ||| |||||||  |||||||||||||||||| |||| ||||    
T  40056837 ccatttagcggataatccatggattttgaggtatccacggatttatacggatatccatggataacattcataagaaaa 40056914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 33743094 - 33742826
Alignment:
Q  16 atcagtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgt 115  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||        | |||| ||| ||||||||  ||| |||||||||| |||||||||    
T  33743094 atcagtagggatgtaaatggatatccatggatgcggatagtgtgata--------cgctccgttacataaatatgtaatccgtaccctatccatatccgt 33743003  T
Q  116 gctgatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaa-tttg 214  Q
    |  ||||| | ||| || |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |  ||||||| ||||    
T  33743002 gtcgatatccttttagcgggtaatccgtggattttgaggtatatgcgggtttatacagatatccatggataacatttgtaaaaataaaataaaaattttg 33742903  T
Q  215 ttta---nnnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||             |||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  33742902 tttaattttttttgtttgctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttaacaaaacata 33742826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 25 - 288
Target Start/End: Complemental strand, 35188969 - 35188704
Alignment:
Q  25 gatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatatt 124  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| ||| |||| |||||||||||| ||||  ||| |||||  ||||||||||  ||||     
T  35188969 gatgtaaatggatatccatggatgcggatagtgtgatattcgtgtccgctccgttagataaatatgaaatctgtatcctatctatatccgtgcgaatatc 35188870  T
Q  125 cgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttg-tttannnn 222  Q
    | ||| || | |||||| |||||||| ||||||| || |||||||||| |||||||||||||||||||||||||| |  || ||||||||| ||||        
T  35188869 catttagcggataatccatggatttttaggtatccgcaggtttatacaaatatccatggataacatttataaaaataaaataaaaaatttgttttaattt 35188770  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         | ||||||||||||||||||| ||  ||| ||| |||||||||||||||||||||||||||    
T  35188769 tttttaactaaaatttagaaacaaaggttattcacatgtattttcttttctttttagcaaaacata 35188704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 36 - 288
Target Start/End: Original strand, 42836748 - 42836999
Alignment:
Q  36 atatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcagg 135  Q
    |||||||||||| |||||||||||||||| || ||| |||| |||||||||||| ||||  ||||| ||| ||||||||||| ||||| | |||  | |     
T  42836748 atatccatggatgcggatagtgtgatatctgtgtccgctccgttagataaatatgaaatatgtaccatatccatatccgtgcagatatccatttaacgga 42836847  T
Q  136 taatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaa-aattataaaaatttgtttannnnnnnnnagctaaa 234  Q
    ||||||| ||| ||| ||||||| ||||||||| ||| |||| ||||||||||||||||||||| || || |||||||||||||         |||||||    
T  42836848 taatccgaggagttttaggtatccgcgggtttacacagatattcatggataacatttataaaaataaata-aaaaatttgttta-atttttttagctaaa 42836945  T
Q  235 atttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  42836946 atttagaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 42836999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 39207472 - 39207228
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||  |||| |||||||||||| |||| |||||||| | ||||||||||| |||||    
T  39207472 ggatgtaaatggatatccatggatgcggatagtgtgatatccgtgtctgctccgttagataaatatgaaatccgtaccctttccatatccgtgcggatat 39207373  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtttannnnn 223  Q
     ||||| || ||||||||| ||||||||||                    |||||||||||||||||||||||||| |  ||||||| |||||||         
T  39207372 ccgtttagcgggtaatccgcggattttgag--------------------atatccatggataacatttataaaaataaaataaaaaattgtttaatttt 39207293  T
Q  224 nnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
        ||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||||||||||    
T  39207292 ttttagctaaaatttagaaacaaaggttcttcacatgcaatttcttttctttttagcaaaacata 39207228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 3925967 - 3926213
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||  ||||||||||||  ||||||||||||||  || ||| |||| |||||||||||| |||| |||||| ||| ||||||||||| |||||    
T  3925967 ggatgtaaat--atatccatggatgtggatagtgtgatatttgtgtccgctccgttagataaatatgaaatccgtaccatatccatatccgtgcagatat 3926064  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtttannnnn 223  Q
     | ||| || |||||||||                  ||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||         
T  3926065 ccatttagcgggtaatccg------------------cgggtttatacgtatatccatggataacatttataaaaaaataaaaaaaatttgtttaatttg 3926146  T
Q  224 nnnn--agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
          ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  3926147 ttttttagctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 3926213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 2209291 - 2209553
Alignment:
Q  24 ggatgtaaatggatatccatggatacg--gatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgat 121  Q
    ||||||||||| |||||||| |||  |  ||||||||||||||||| | |  ||  || || ||||||||||| ||  |||||| |||| ||  ||  ||    
T  2209291 ggatgtaaatgaatatccatagatgtgtagatagtgtgatatccgtgtacgttctgttggacaaatataaaatccgcgccctatccatacccacgcaaat 2209390  T
Q  122 attcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtttannn 221  Q
    || ||||| || |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||   | ||||| ||| |||       
T  2209391 atccgtttagcgggtaatccatggattttgaggtatatgcgggtttatacagatatccatggataacatttattaaaaa---aaaaaaacttg-ttaatt 2209486  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
          ||||| |||||| |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  2209487 ttttttagctagaatttaaaaacaaaagttcatcacatgcattttcttttctttttagcaaaacata 2209553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 42879214 - 42879087
Alignment:
Q  72 actccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatac 171  Q
    ||||| || ||||||||| ||||  ||||  ||| |||||||  || ||||| ||||| || |||||||||| ||| |||||||||  || |||||||||    
T  42879214 actccgttggataaatatgaaatatgtacaatatccatatcccggcggatatccgtttagcgggtaatccgtagatgttgaggtattcgcaggtttatac 42879115  T
Q  172 atatatccatggataacatttataaaaa 199  Q
    |||||| |||||||||||||||||||||    
T  42879114 atatattcatggataacatttataaaaa 42879087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 7e-55; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 41039087 - 41039353
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||| |||| |||||||||||| |||| |||||| ||| ||||||||||| |||||    
T  41039087 ggatgtaaatggatatccatggatgcggataatgtgatatccgtgtccgctccgttagataaatatgaaatccgtaccatatccatatccgtgcggatat 41039186  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaa-atttgttt--ann 220  Q
     | ||| || ||||||||| ||||||| ||||||| || | |||||||| |||||||||||||||||||||||||| |  ||||||  |||||||         
T  41039187 ccatttagcgggtaatccgcggatttttaggtatccgcagatttatacagatatccatggataacatttataaaaataaaataaaatttttgtttgattt 41039286  T
Q  221 nnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacat 287  Q
           ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  41039287 tttttttagctaaaatttagaaacaaaggttcttcatatgtattttcttttctttttagcaaaacat 41039353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 38951375 - 38951641
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||| |||||||||| ||| |||  ||| ||||||||||||||||||| ||| |||| |||||||| || |||||    
T  38951375 ggatgtaaatggatatccatggatgcggagagtgtgatattcgtgtccgttccgttagataaatataaaattcatactctatccatatccgcgcggatat 38951474  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgttt-annn 221  Q
     |||||  | | ||||| | | |||||||||||   ||||||||||| | |||||| |||||||||||||||| || |  || |||||||||||| |       
T  38951475 ccgtttaacggataatctgcgaattttgaggtaatcgcgggtttatatagatatccgtggataacatttataataataaaataaaaaatttgtttaattc 38951574  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
          ||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  38951575 ttttttagctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttaacaaaacata 38951641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 23626609 - 23626779
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |  ||||||||||||  || ||| |||| |  ||||||||| |||||||||| |||||||||||| ||| |||||    
T  23626609 ggatgtaaatggatatccatggatgcaaatagtgtgatatttgtgtccgctccgtcggataaatatgaaattcgtacactattcatatccatgcggatat 23626708  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttat 194  Q
     ||||| |||||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  23626709 ccgtttagcaggtaatccacagattttgaggtatccgcgagtttatacatatatccatggataacatttat 23626779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 22278064 - 22278333
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||||||||||   |||| | |||||||||| |||  ||| || ||||||||| |||| ||||||||||  |||||  ||| |||||    
T  22278064 ggatgtaaatggatatccatggatgtagatattatgatatccgtgtccgttccgttggataaatatgaaatccgtaccctatcaatatctatgcggatat 22278163  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttataca-----tatatccatggataacatttataaaaaaattat-aaaaatttgttt 217  Q
     |||||  | ||| ||||  |||||||||||||| ||||||||||||||      |||||||||||||||||||||||||| |  || ||||||||||||    
T  22278164 ccgtttatcgggt-atccacggattttgaggtatttgcgggtttatacagatatcatatccatggataacatttataaaaataaaataaaaaatttgttt 22278262  T
Q  218 annnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |         ||||||||||||||||||||  ||| | | |||||||||||||||||||| ||||||||||    
T  22278263 aaatttttttagctaaaatttagaaacaaatgttcttaacatgcattttcttttctttttggcaaaacata 22278333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 40572261 - 40572091
Alignment:
Q  29 taaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtt 128  Q
    |||||||||||||||||||  |||||||||||||| ||| |||||||| |||||||||| | |||||  |||||||| ||||||| ||| ||||| | ||    
T  40572261 taaatggatatccatggatgtggatagtgtgatattcgtgtccactccgttagataaatgtgaaatt--taccctatccatatccatgcggatatccatt 40572164  T
Q  129 tcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
    | || | |||||| ||||||||||||||||| ||| |||||||  ||||| |||||||||||| |||| ||||    
T  40572163 tagcggataatccatggattttgaggtatctacggatttatacggatatctatggataacattcataagaaaa 40572091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 8819674 - 8819499
Alignment:
Q  25 gatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatatt 124  Q
    ||||||||||||||||||||||| ||||||||||||||| ||  |||||||| || || |||||| |||||||| |||||| |||||||| || |||||     
T  8819674 gatgtaaatggatatccatggatgcggatagtgtgatattcgcgtccactccgttggacaaatatgaaattcgttccctatccatatccgcgcggatatc 8819575  T
Q  125 cgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
    | ||| || ||||||||  | ||||| ||||||| | || |||||||| |||||| | |||||||||||||||||||    
T  8819574 catttagcgggtaatccacgaattttaaggtatccgtggatttatacagatatcc-tagataacatttataaaaaaa 8819499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 51356936 - 51357189
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||||||||||||||| || ||| |||| || || |||||| ||||| || |||||| |||||||   | |||||    
T  51356936 ggatgtaaatggatatccatggatgcggatagtgtgatatctgtgtccgctccgttggacaaatatgaaatttgtgccctatccatatccacacggatat 51357035  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaa-aaattataaaaatttgtttannnn 222  Q
       ||| || ||||||||  | ||||||| ||| | || |||||||||| ||||||||||||||||||||||||| ||||| | || |||| ||          
T  51357036 caatttagcgggtaatccacgaattttga-gtacccgcaggtttatacagatatccatggataacatttataaaacaaattgttaatatttttt------ 51357128  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         |||| ||||||| |||| ||  ||||||| |||||||||||||||||||||||||||||||    
T  51357129 -----agctgaaatttaaaaaccaaagttcatcacatgcattttcttttctttttagcaaaacata 51357189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 19841498 - 19841761
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||| |||| |||||| ||||||||||||||||  | ||| |||  |  ||||||||| |||| ||||||||||  ||||| |||| |||||    
T  19841498 ggatgtaaatgg-tatc-atggatgcggatagtgtgatatctatgtccgctctgtcggataaatatgaaatccgtaccctatcgatatctgtgcggatat 19841595  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     ||||| || ||||||| |  |||||||||||||| |||| |||||||| |||| ||||||||||||||||||||| |  || ||||| || ||||        
T  19841596 ccgtttagcgggtaatctgctgattttgaggtatccgcggatttatacagatattcatggataacatttataaaaataaaataaaaaaattatttaattt 19841695  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         | |||||||||| |||||||| ||| ||| |||| ||||||||||||||||  ||||||||    
T  19841696 ttttgaactaaaatttaaaaacaaaggttcttcacatgcgttttcttttctttttaagaaaacata 19841761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 43624371 - 43624433
Alignment:
Q  228 agctaaaatttagaaacaaa--gattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||||||||||||||||  ||||| ||| |||||||||||||||||||||||||||||||    
T  43624371 agctaaaatttagaaacaaaaagattcttcacatgcattttcttttctttttagcaaaacata 43624433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 29116983 - 29117041
Alignment:
Q  230 ctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||    
T  29116983 ctaaaatttagaaacaaaggttcatcacatgcattttattttcttcttagcaaaacata 29117041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 42555076 - 42555251
Alignment:
Q  15 catcagtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccg 114  Q
    ||||| || ||||||| |||||||||||||||| ||||||||||||| |   ||||| |||| || ||||||||| ||||| |||| |||| |||||| |    
T  42555076 catcactagggatgtagatggatatccatggatgcggatagtgtgatgt--atatccgctccgtttgataaatatgaaatttgtactctatccatatctg 42555173  T
Q  115 tgctgatattcgtttcgcaggtaatccgtggattttgaggtatctgc-gggtttatacatatatccatggataacatttataaaaa 199  Q
     |        |||||  |||||||||  | ||||||||| |||| || ||||||||||| |||| ||||||||||||| |||||||    
T  42555174 cg--------cgttttacaggtaatctatagattttgagatatccgcggggtttatacagatattcatggataacattaataaaaa 42555251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 284
Target Start/End: Complemental strand, 40715109 - 40714966
Alignment:
Q  143 tggattttgaggtatctgcgggtttatacatatatccatggataacatttata----aaaaaattataaaaatttgtttannnnnnnnnagctaaaattt 238  Q
    |||||||| ||||||| |  |||||||||||||||||||||||||||| ||||    ||||||||| ||| ||||||| |         |||| ||||||    
T  40715109 tggattttaaggtatccgtaggtttatacatatatccatggataacatctataaaataaaaaatta-aaagatttgttca-ttttttttagctgaaattt 40715012  T
Q  239 agaaacaaagattcatcatatgcattttcttttctttttagcaaaa 284  Q
    | |||||||  ||||||| |||||||||||||| ||||||||||||    
T  40715011 aaaaacaaaagttcatcacatgcattttcttttgtttttagcaaaa 40714966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 8819477 - 8819422
Alignment:
Q  233 aaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||| |||| ||  ||||||| |||||||||||||||||||||||||||||||    
T  8819477 aaatttaaaaaccaaagttcatcacatgcattttcttttctttttagcaaaacata 8819422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 17120448 - 17120393
Alignment:
Q  233 aaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||| |||||||  ||||||| ||||||||||||||||||||| |||||||||    
T  17120448 aaatttaaaaacaaaagttcatcacatgcattttcttttctttttaacaaaacata 17120393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 36464994 - 36464935
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacat 287  Q
    |||| ||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||    
T  36464994 agctgaaatttaaaaaccaaagttcatcacatgcattttcttttctttttagcaaaacat 36464935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 36465187 - 36465014
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||| | |||| |||||||||||||||  |||||| |||| || || |||||| ||||   |   |||| ||||||||    | |||    
T  36465187 ggatgtaaatggatatctacggatgcggatagtgtgatatttgtatccgctccgttggacaaatatgaaatcaatgttctatccatatccgcatggttat 36465088  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaa 198  Q
     | ||| || |||||||| |||||||| |  || ||||||||||||||| ||| ||||| |||||||||||||||    
T  36465087 ccatttagcgggtaatccatggatttt-aaatacctgcgggtttatacagatacccatgaataacatttataaaa 36465014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 47223059 - 47223176
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||  | |||||||| ||||||   |||| | ||| || ||||||||| | ||| || |||| | ||||||||||| |||||    
T  47223059 ggatgtaaatggatatccatgagtgcggatagtatgatatttatatctattccgttggataaatatgatatttgtgccctctccatatccgtgcggatat 47223158  T
Q  124 tcgtttcgcaggtaatcc 141  Q
     ||||  |||||||||||    
T  47223159 ccgttatgcaggtaatcc 47223176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 42595883 - 42595842
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatcc 65  Q
    |||||| ||||| |||||||||||||||||||| ||||||||    
T  42595883 ggatgtcaatgggtatccatggatacggatagtatgatatcc 42595842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 18903369 - 18903305
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaata 88  Q
    |||||| ||||||||||||| || ||||||||| ||||| ||||  |||| || |||||||||||    
T  18903369 ggatgtcaatggatatccatagagacggatagtatgatagccgtccccaccccgttagataaata 18903305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 42555272 - 42555332
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||| ||||||| |||||||  ||||| | |||||||||||||||||||||| ||| ||||    
T  42555272 agctgaaatttaaaaacaaaagttcataacatgcattttcttttctttttagaaaagcata 42555332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 5938484 - 5938747
Alignment:
Q  19 agtatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgct 118  Q
    |||| ||||||||||||||||||||||||  | |||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||| |      
T  5938484 agtaaggatgtaaatggatatccatggatgtgaatagtgtgatatccgtgtccactccgttagataaatatgaaattcgtaccctatccatatccgcgtg 5938583  T
Q  119 gatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttat---aaaaaaattataaaaatttgt 215  Q
    ||||| ||||| || ||||||||   |||||||| ||||||||||||||||||| |||||||||||||||||||||   ||||||||| |  | |||| |    
T  5938584 gatatccgtttagcgggtaatccacagattttgaagtatctgcgggtttatacaaatatccatggataacatttatataaaaaaaattgttgatattttt 5938683  T
Q  216 ttannnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||          || |||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||    
T  5938684 tt---------tagttaaaatttagaaacaatggttcttcacatgcattttcttttctttttagcaaaacata 5938747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 73 - 288
Target Start/End: Original strand, 5704406 - 5704622
Alignment:
Q  73 ctccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttataca 172  Q
    ||||||||||||||||| ||||  |||| ||||  ||||||| || ||||| ||||| || ||||||||   |||||||||||||| |||||||||||||    
T  5704406 ctccattagataaatatgaaatctgtactctatctatatccgcgcggatatccgtttagcgggtaatccaatgattttgaggtatccgcgggtttataca 5704505  T
Q  173 tatatccatggataacatttataaaaaaattat-aaaaatttgtttannnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttctttt 271  Q
     |||||||||||||||||||||||||| |  || |||||||||||||         ||||||||||||||||||||| ||| ||| ||||||||||||||    
T  5704506 gatatccatggataacatttataaaaataaaataaaaaatttgtttaattttttttagctaaaatttagaaacaaaggttcttcacatgcattttctttt 5704605  T
Q  272 ctttttagcaaaacata 288  Q
     ||||||||||||||||    
T  5704606 atttttagcaaaacata 5704622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 288
Target Start/End: Complemental strand, 31576286 - 31576052
Alignment:
Q  59 gatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggattttgaggtatc 158  Q
    ||||||||| |||||||||||| |||||||| ||||| ||||||||| ||||||||||  ||||| | ||| || ||||||||| | ||||| |||||||    
T  31576286 gatatccgtgtccactccattatataaatatgaaatttgtaccctatccatatccgtgtggatatccatttagcgggtaatccgcgaatttttaggtatc 31576187  T
Q  159 tgcgggtttatacatatatccatggataacatttataaaaaaattataaaaa-----tttgtttannnnnnnnnagctaaaatttagaaacaaagattca 253  Q
     | |||||| |||| |||||||||||||||||||||||||| |  |||||||     ||| ||||         ||||||||||||||||||||| |||     
T  31576186 cgtgggtttgtacagatatccatggataacatttataaaaataaaataaaaaatttgtttatttatttttatttagctaaaatttagaaacaaaggttct 31576087  T
Q  254 tcatatgcattttcttttctttttagcaaaacata 288  Q
    ||| |||||||||||||||||||||||||||||||    
T  31576086 tcacatgcattttcttttctttttagcaaaacata 31576052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 42625388 - 42625212
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||||  |||||||||||| |||| |||||||||| ||||||| ||| |||||    
T  42625388 ggatgtaaatggatatccatggatgcggagagtgtgatatccgtgtccactcg-ttagataaatatgaaatccgtaccctatccatatccatgcggatat 42625290  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
    || ||| || | |||||| ||||||||||||||||  ||| |||||||  |||||||||||||||||| |||| ||||    
T  42625289 tcatttagcggataatccatggattttgaggtatccacggatttatacggatatccatggataacattcataagaaaa 42625212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 5109962 - 5110227
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||| |||||||||| || |||||||||||||||  || | | |||  | |||||||||| |||| ||||  |||| ||||| | ||| |||||    
T  5109962 ggatgtaaatagatatccatg-atgcggatagtgtgatatttgtgtgcgctctgtcagataaatatgaaatccgtattctatccatattcatgcggatat 5110060  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgttt-annn 221  Q
     ||||| || ||||||||  ||||||||||||||| |||| ||| |||| |||||||||||||||||||||||||| |  || |||||||||||| |       
T  5110061 ccgtttagcgggtaatccacggattttgaggtatccgcggatttttacagatatccatggataacatttataaaaataaaataaaaaatttgtttaattt 5110160  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
          ||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  5110161 ttttttagctaaaatttagaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 5110227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 13626665 - 13626421
Alignment:
Q  30 aaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgttt 129  Q
    |||||||||||||| ||| ||||||||||||||| ||| |||  | | |||||||||||| |||| |||||||||| |||||||| || ||||| |  ||    
T  13626665 aaatggatatccatagatgcggatagtgtgatattcgtgtccgtttcgttagataaatatgaaatccgtaccctatccatatccgggcggatatcctctt 13626566  T
Q  130 cgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttg-tttannnnnnnnn 227  Q
     |  |||||||||   |||||||| |||| ||||||||||||| |||| ||||||||||||||||||||| |  || ||||||||| ||||             
T  13626565 agagggtaatccgcatattttgagatatccgcgggtttatacagatattcatggataacatttataaaaataaaataaaaaatttgttttattttttttt 13626466  T
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttc 272  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  13626465 agctaaaatttagaaacaaaggttcttcacatgcattttcttttc 13626421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 288
Target Start/End: Complemental strand, 45151595 - 45151349
Alignment:
Q  25 gatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatatt 124  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||| |||  |||||||||||| ||||  ||| |||||||||||| |||  |||||     
T  45151595 gatgtaaatggatatccatgcatgcggatagtgtgatatccgtgtccgctctgttagataaatatgaaatctgtatcctattcatatctgtgtggatatc 45151496  T
Q  125 cgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtttannnnnn 224  Q
    | ||| || ||||                  ||| ||||||||||||| ||||| ||||||||||||||| ||||| | | ||||| |||||||          
T  45151495 catttagcgggta----------------taatccgcgggtttatacagatatctatggataacatttat-aaaaattaaaaaaaaattgtttaattttt 45151413  T
Q  225 nnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
       |||||||||||||| |||||| ||| ||| ||||||||| |||||||||||||||||||||    
T  45151412 tttagctaaaatttagagacaaaggttcttcacatgcatttttttttctttttagcaaaacata 45151349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 13807326 - 13807444
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||  |||||||||||||||| || ||| |  | ||||| |||||| |||| |||| ||||| ||||||||||| |||||    
T  13807326 ggatgtaaatggatatccatggacgcggatagtgtgatatctgtgtccgcctcgttagaaaaatatgaaatccgtatcctatccatatccgtgcggatat 13807425  T
Q  124 tcgtttcgcaggtaatccg 142  Q
     | ||| || |||||||||    
T  13807426 ccatttagcgggtaatccg 13807444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 13807504 - 13807564
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||    
T  13807504 agctaaaatttagaaacaaaggttcttcacatgcattttcttttctgtttagcaaaacata 13807564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 201
Target Start/End: Complemental strand, 45458617 - 45458581
Alignment:
Q  165 tttatacatatatccatggataacatttataaaaaaa 201  Q
    |||||||| ||||||||||||||||||||||||||||    
T  45458617 tttatacagatatccatggataacatttataaaaaaa 45458581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 42604219 - 42604281
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaa 86  Q
    |||||||||||||||||||||  |  ||||||| |||||||||| ||| ||| ||||||||||    
T  42604219 ggatgtaaatggatatccatgtgtgtggatagtatgatatccgtgtccgctctattagataaa 42604281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 31604592 - 31604685
Alignment:
Q  30 aaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||| |||||| ||||||||||||||||  || ||  |||| || ||||||||| ||||| ||||| |||  ||||| |||| |||||    
T  31604592 aaatggatattcatggacacggatagtgtgatatttgtgtctgctccgttggataaatatgaaatttgtaccttatctatatctgtgcggatat 31604685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 24 - 287
Target Start/End: Complemental strand, 23810052 - 23809787
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||| |||| |||||||||| ||||||||||  |||||    
T  23810052 ggatgtaaatggatatccatggatgcggatagtgcgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatccgtggggatat 23809953  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgttta--nnn 221  Q
     | ||| ||  |||||||  ||||||| ||||||| ||| ||||||||| ||||||||  |||||||||||||||| |  ||||||| |||||||         
T  23809952 ccatttagcgagtaatccacggatttttaggtatccgcgagtttatacagatatccataaataacatttataaaaataaaataaaaaattgtttaatttt 23809853  T
Q  222 nnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacat 287  Q
          |||||||||| | |||||||| ||| ||| |||||||| |||||||||||||||||||||    
T  23809852 ttttttagctaaaattcataaacaaaggttcttcacatgcatttacttttctttttagcaaaacat 23809787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 38440815 - 38440552
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| ||| || | || ||||||||| |||||||||      ||||||||| ||  ||||    
T  38440815 ggatgtaaatgaatatccatggatgcggatagtgtgatattcgtgtccgcttcgttggataaatatgaaattcgta------tcatatccgcgcgaatat 38440722  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgttta---- 218  Q
     | ||| ||||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |  || |||||||||||||        
T  38440721 ccatttagcaggtaattcgtggattttgaggtatctgcaggtttatacagatatccatagataacatttataaaaataaaataaaaaatttgtttaattc 38440622  T
Q  219 nnnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
             ||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||    
T  38440621 tttttttttagctaaaatttagaaacaaagattcttcacatggattttcttttctttttagtaaaacata 38440552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 288
Target Start/End: Complemental strand, 11039561 - 11039297
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||| ||||||||||||| | |||| | |||||||||| |||||||| || ||||||||| ||||| ||||| ||| ||||||||||| | |||    
T  11039561 ggatgtaaatagatatccatggatgcagataatatgatatccgtgtccactccgttggataaatatgaaatttgtaccatatccatatccgtgcgggtat 11039462  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     ||||  || |||| |||  | ||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |  || |||||| ||||||        
T  11039461 ccgttcagcgggta-tccacgaattttgaggtatctgcgggtttatacagatatccatggatgacatttataaaaataaaataaaaaatctgttta-ttt 11039364  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttc-ttttctttttagcaaaacata 288  Q
         || ||||||||||||| |||| ||| ||| |||||||||| |||||||||||||||||||||    
T  11039363 tttttagataaaatttagaaataaaggttcttcacatgcattttctttttctttttagcaaaacata 11039297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 284
Target Start/End: Original strand, 25501897 - 25502156
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||||||| ||   || |||||||||||| | | | |||| |||||||||||| |||||  |||||||||||||| || || |||||    
T  25501897 ggatgtaaatggatatccatgaatgttgaaagtgtgatatccatgttcgctccgttagataaatatgaaatttataccctattcatatacgcgcagatat 25501996  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtttannnnn 223  Q
     ||||| ||  |||||||  | ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |  |||||||      ||         
T  25501997 ccgtttagctagtaatccacgaattttgaggtatccgcgggtttatacagatatccatggataacatttataaaaataaaataaaaaacataata-ttct 25502095  T
Q  224 nnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaa 284  Q
        ||||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||    
T  25502096 ttttagctaaaatttagaaacaaaggttcttcagatgcattttattttctttttagcaaaa 25502156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 7766811 - 7767082
Alignment:
Q  21 tatggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctga 120  Q
    ||||||||||||||||||| ||||||| ||||||||||||||| | | ||| |||| || ||||||||| ||||  ||| | ||| ||||||||||  ||    
T  7766811 tatggatgtaaatggatatacatggatgcggatagtgtgatattcatgtccgctccgttggataaatatgaaatatgtatcttatccatatccgtgtgga 7766910  T
Q  121 tattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataac----atttataaaa--aaattataaaaatttg 214  Q
    ||| ||||| || |||||||||  |||||||| ||||  ||| ||||||||| || ||||||||||||    ||||||||||  ||| || |||||||||    
T  7766911 tatccgtttagcgggtaatccgcagattttgaagtattcgcgcgtttatacagatttccatggataacatttatttataaaactaaaata-aaaaatttg 7767009  T
Q  215 tttannnnnnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacat 287  Q
    |||          | ||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||||    
T  7767010 tttcatcttttttatctaaaatttagaaacaaaggttctttacatgcattttcttttctttttagcaaaacat 7767082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 27336696 - 27336873
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||| ||||||||| | ||||||||||||||||| |||||| | |||||||||||| |||| |  ||||||| ||||||| ||| |||||    
T  27336696 ggatgtaaatggatgtccatggatgcagatagtgtgatatccgtgtccacttcgttagataaatatgaaatccagaccctatccatatccatgcggatat 27336795  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
     | ||| || | |||||| ||||||||||||||||  ||| |||||||  |||||||||||||||||| |||| ||||    
T  27336796 ccatttagcggataatccatggattttgaggtatccacggatttatacggatatccatggataacattcataagaaaa 27336873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 33189147 - 33189411
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||| |||||| | |||||| |||||||||| |||||||| || ||||||||| ||||  || ||||||  |||||||    |||||    
T  33189147 ggatgtaaatggatatctatggatgcagatagtttgatatccgtgtccactccgtttgataaatatgaaatatgtgccctatcaatatccgcatggatat 33189246  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattat-aaaaatttgtttannnn 222  Q
     ||||| || |||||||| | |||||||||||||   || ||||||||| |||||||||||||||||||| ||||| |  || |||||||||||||        
T  33189247 ccgtttagcgggtaatccatagattttgaggtattcacgagtttatacagatatccatggataacatttaaaaaaataaaataaaaaatttgttta-att 33189345  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         |||||||||| |||||||||| ||| ||| |||  ||||||||||||||||| ||||||||    
T  33189346 tttttagctaaaattcagaaacaaaggttcttcacatgtgttttcttttctttttagaaaaacata 33189411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 2944442 - 2944266
Alignment:
Q  25 gatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatatt 124  Q
    |||||||||||| ||||||||||  |||| ||||||||||||| ||| |||  ||  |||| ||| |||   |||||||||||||||| || | |||||     
T  2944442 gatgtaaatggacatccatggatgtggatggtgtgatatccgtgtccgctctgttgtataagtatgaaaactgtaccctattcatatctgtccagatatc 2944343  T
Q  125 cgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
    ||||| || ||||||||  ||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  2944342 cgtttagcgggtaatccacggattttgaggtatccgcgggtttatacagatatccatggataatatttataataaaa 2944266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 288
Target Start/End: Complemental strand, 30541854 - 30541597
Alignment:
Q  28 gtaaatggatatcca---tggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatatt 124  Q
    |||||||||||||||   ||||| |||||||| |||||| ||||||| |||| || ||| ||||| |||| |||||||||| |||||||| || |||||     
T  30541854 gtaaatggatatccaccatggatgcggatagtatgatattcgtatccgctccgttggattaatatgaaatccgtaccctatccatatccgcgcggatatc 30541755  T
Q  125 cgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtttannnnnn 224  Q
    | ||   |  ||| |||||||||||||||||||| || |||||||||| ||||||||| ||  ||||||||||||||| ||     ||| |||           
T  30541754 cattgaacgagtactccgtggattttgaggtatccgcaggtttatacagatatccatgaat--catttataaaaaaataatt----ttttttttattctt 30541661  T
Q  225 nnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
       |||||||||||||||| | || ||||||| |||||||||||||| ||||||||||||||||    
T  30541660 tttagctaaaatttagaaaaataggttcatcacatgcattttcttttatttttagcaaaacata 30541597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 22519565 - 22519388
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||||||||||||||||||||| ||||   | ||  |||  || ||||| ||| |||| |||||||||| | |||||| |  |||||    
T  22519565 ggatgtaaatggatatccatggatacggatagtgtaatatttttgtctgctcggttggataattatgaaatccgtaccctatccgtatccgcgtggatat 22519466  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
     | ||| |||||||||||  | ||||| |||||||  |||||||||||| ||||||||||||| ||||||||||||||    
T  22519465 ccatttagcaggtaatccacgaattttaaggtatcatcgggtttatacaaatatccatggatatcatttataaaaaaa 22519388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 288
Target Start/End: Original strand, 5972734 - 5972980
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    ||||||||||||||||||||| || ||||||||||||||||||| ||  |||| |||||||||||| |||| |||||||||| ||||| ||||| |||||    
T  5972734 ggatgtaaatggatatccatgaatgcggatagtgtgatatccgtgtctgctccgttagataaatatgaaatccgtaccctatccatatacgtgcggatat 5972833  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaa-atttgtttannnn 222  Q
     | ||| || ||||||||                  ||||||||||||| |||||||||||||||||||||| ||| |  |||||| | |||||||        
T  5972834 ccatttagcgggtaatcc------------------gcgggtttatacaaatatccatggataacatttatacaaataaaataaaataattgtttaagtt 5972915  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         ||||||||||||||||| ||| ||| ||| | ||||||||||||| |||||||||||||||    
T  5972916 tttttagctaaaatttagaaac-aaggttcttcacaggcattttcttttcattttagcaaaacata 5972980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 36298538 - 36298724
Alignment:
Q  29 taaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattcgtt 128  Q
    ||||||||||||||||||| || ||||||| | |||||| | |||||| || |  |||||| ||||| || || |||||||||||| ||  |||| | ||    
T  36298538 taaatggatatccatggatgcgaatagtgtcacatccgtgttcactccgttgggcaaatatgaaatttgtgcc-tattcatatccgcgcaaatatccatt 36298636  T
Q  129 tcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaatttgtt 216  Q
    | || |||||||   | ||||||||||||| | |  |||||||| |||||||||||||||| |||||||||||||| ||||| |||||    
T  36298637 tagcgggtaatctacgaattttgaggtatccgtgaatttatacagatatccatggataacacttataaaaaaattaaaaaaaattgtt 36298724  T

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Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 40910663 - 40910606
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaac 285  Q
    |||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||    
T  40910663 agctaaaatttaaaaacaaaagttcatcacatgcattttcttttctttttagcaaaac 40910606  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 1053453 - 1053365
Alignment:
Q  26 atgtaaatggata-tccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatcc 113  Q
    ||||||||||||| ||||||||| | ||||||||||||||||| ||| |||||||||| |||||| ||||  || || |||||||||||    
T  1053453 atgtaaatggataatccatggatgcagatagtgtgatatccgtgtccgctccattagacaaatatgaaatctgtgccttattcatatcc 1053365  T

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Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 15954805 - 15954745
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||| ||||||| |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  15954805 agcttaaatttaaaaacaaaagttcatcacatgcattttcttttctttttagcaaaacata 15954745  T

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Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 31457228 - 31457275
Alignment:
Q  241 aaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||    
T  31457228 aaacaaaagttcatcacatgcattttcttttctttttagcaaaacata 31457275  T

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Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 284
Target Start/End: Complemental strand, 2944243 - 2944190
Alignment:
Q  231 taaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaa 284  Q
    ||||| ||| |||||||  ||||||| |||||||||||||||||||||||||||    
T  2944243 taaaaattaaaaacaaaagttcatcacatgcattttcttttctttttagcaaaa 2944190  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 15954866 - 15954827
Alignment:
Q  163 ggtttatacatatatccatggataacatttataaaaaaat 202  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  15954866 ggtttatacatatatcagtggataacatttataaaaaaat 15954827  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 31457194 - 31457230
Alignment:
Q  163 ggtttatacatatatccatggataacatttataaaaa 199  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  31457194 ggtttatgcatatatctatggataacatttataaaaa 31457230  T

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Target: scaffold0115 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 21818 - 21995
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||| ||||||| ||| |||||    
T  21818 ggatgtaaatggatatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatccatgcggatat 21917  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
     | | | || | |||||| ||||||||||||||||  ||| |||||||  |||||||||||||||||| |||| ||||    
T  21918 ccatatagcggataatccatggattttgaggtatccacggatttatacggatatccatggataacattcataagaaaa 21995  T

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Target: scaffold0691 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 7671 - 7848
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| |||| |||||||||| ||||||| ||| |||||    
T  7671 ggatgtaaatcgatatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatccatgcggatat 7770  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaa 201  Q
     | ||| || | |||||  ||||||||||||||||  ||  |||||||  |||||||||||||||||| |||| ||||    
T  7771 ccatttagcggataatcaatggattttgaggtatccacgaatttatacggatatccatggataacattcataagaaaa 7848  T

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Target: scaffold0057 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 211
Target Start/End: Original strand, 66351 - 66538
Alignment:
Q  24 ggatgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatat 123  Q
    |||||||||||||| ||||||||| |||||||||||||||  || ||  ||||||| || |||||| ||||  |  |||||| |||||| ||||  ||||    
T  66351 ggatgtaaatggatgtccatggatgcggatagtgtgatatttgtgtcagctccattggacaaatatgaaatctgagccctatccatatctgtgcgaatat 66450  T
Q  124 tcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaaaaaattataaaaat 211  Q
    |  ||| || |||||| | |||||||||||||||| ||||| ||||||| |||||||||||||  |||||||||||||| | ||||||    
T  66451 ttatttagcgggtaattcatggattttgaggtatccgcgggattatacagatatccatggatactatttataaaaaaataaaaaaaat 66538  T

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Target: scaffold0155 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 288
Target Start/End: Complemental strand, 7248 - 6999
Alignment:
Q  26 atgtaaatggatatccatggatacggatagtgtgatatccgtatccactccattagataaatataaaattcgtaccctattcatatccgtgctgatattc 125  Q
    |||||||||||||||||||||| | |||||||||||||| |||||| || | |||||||||||| |||||||||||||||  |||||| |              
T  7248 atgtaaatggatatccatggatgcagatagtgtgatatctgtatccgct-cgttagataaatatgaaattcgtaccctatctatatccat---------- 7160  T
Q  126 gtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatatccatggataacatttataaa---aaaattataaaaatttgtttannnn 222  Q
         || |||||||||  |||||| ||||||   ||| |||||||| ||||||||||||||||||||||||   ||||||  |||||  |  | |        
T  7159 -----gcgggtaatccgcagatttttaggtattcacggatttatacagatatccatggataacatttataaaaataaaatttaaaaaaaataataattct 7065  T
Q  223 nnnnnagctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaacata 288  Q
         ||||||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  7064 tttttagctaaaattttgaaacaaaggttcttcacatgcattttcttttctttttagcaaaacata 6999  T

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Target: scaffold0246 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 182
Target Start/End: Complemental strand, 10839 - 10735
Alignment:
Q  78 ttagataaatataaaattcgtaccctattcatatccgtgctgatattcgtttcgcaggtaatccgtggattttgaggtatctgcgggtttatacatatat 177  Q
    |||||||||||| |||| ||||||||||||||||||  || ||||| ||||| || |||||||| || ||||   ||||| |||||||||||||| ||||    
T  10839 ttagataaatatgaaatccgtaccctattcatatccacgcggatatccgtttagcgggtaatccatgtatttcatggtatttgcgggtttatacagatat 10740  T
Q  178 ccatg 182  Q
    |||||    
T  10739 ccatg 10735  T

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Target: scaffold0041 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 62431 - 62488
Alignment:
Q  228 agctaaaatttagaaacaaagattcatcatatgcattttcttttctttttagcaaaac 285  Q
    |||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||    
T  62431 agctaaaatttaaaaacaaaagttcatcacatgcattttcttttctttttagcaaaac 62488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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