View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19907_low_7 (Length: 298)
Name: NF19907_low_7
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19907_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 30360485 - 30360751
Alignment:
| Q |
15 |
atcacattctacaacaacttcatcaacgagctaatagctaatggtcacaatcataacttgaaaatattgaaatttgcattttataatttcttaagca--- |
111 |
Q |
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| T |
30360485 |
atcacattctacaacaacttcatcaacgagctaatagctaatggtcacaa-------------atattaaaatttgcattttataatttcttaagcatag |
30360571 |
T |
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| Q |
112 |
--tagtacattgcaatcataattgaaaaattattagttttgcaggtatagaagtatttgtgacactatttcattgggatctaccacaagccttggaagac |
209 |
Q |
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| T |
30360572 |
catagtacattgcaatcataattgaaaaattattagttttgcaggtatagaagtatttgtgacactatttcattgggatctaccacaagccttggaagac |
30360671 |
T |
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| Q |
210 |
gagtatggaggtttcttaagtcctcgcatagtgtaagcgacgatttactagcgttaaaactataatttatttagaattat |
289 |
Q |
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| T |
30360672 |
gagtatggaggtttcttaagtcctcgcatagtgtaagcgacgatgtactaacgttaaaactataatttatttagaattat |
30360751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 25189568 - 25189506
Alignment:
| Q |
177 |
tttcattgggatctaccacaagccttggaagacgagtatggaggtttcttaagtcctcgcata |
239 |
Q |
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| T |
25189568 |
tttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagctctcgcata |
25189506 |
T |
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