View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19907_low_8 (Length: 265)
Name: NF19907_low_8
Description: NF19907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19907_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 5515669 - 5515759
Alignment:
| Q |
149 |
atgtggtgcttcactgctataagtatgtactaaacactcatgtttaatc-aataaagatcattctttcattcaatgtcatggactcgcctg |
238 |
Q |
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| T |
5515669 |
atgtggtgcttcactactataagtatgtactaaacactcatgtttaatcaaataaagatcattctttcattcaatgtcatggactcgcctg |
5515759 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 5515588 - 5515639
Alignment:
| Q |
16 |
atgtacttatagtttagtgtacagagataacttgcataacaagtttccttca |
67 |
Q |
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| T |
5515588 |
atgtacttatagtttagtgtacagagataacttgcataacaagtttccttca |
5515639 |
T |
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