View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19908_high_1 (Length: 272)
Name: NF19908_high_1
Description: NF19908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19908_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 38877980 - 38878243
Alignment:
| Q |
1 |
caccaactccttgactcagtgcttcaggcgaaatggatgtcagctgaaaataatttagattcatagaatttactatgtatcagcactcatctcttacaag |
100 |
Q |
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| T |
38877980 |
caccaactccttgactcagtgcttcaggcgaaatggatgtcagctgaaaataatttagattcatagaatttactatgtatcagcactcatctcttacaag |
38878079 |
T |
|
| Q |
101 |
tcaatgaaaaaacaaataaagatctgacacaagttttataggcctaccacgttaagcattcgctgaattgcaggattttgctcttcagaaccgagagtag |
200 |
Q |
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| T |
38878080 |
tcaaggaaaaaacaaataaagatctgacacaagttttataggcctaccacgttaagcattcgctgaattgcaggattttgctcttcagaaccgagagtag |
38878179 |
T |
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| Q |
201 |
gcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaatcttctctgtgct |
264 |
Q |
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| T |
38878180 |
gcttttgagaaacttgattttggttattgttttctttaatcaagggtgaaatcttctcagtgct |
38878243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 16617449 - 16617701
Alignment:
| Q |
1 |
caccaactccttgactcagtgcttcaggcgaaatggatgtcagctgaaaataattt-agattcatagaatttactatgtatcagcactcatctcttacaa |
99 |
Q |
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| T |
16617449 |
caccaactgctgcacttagtgcttcaggcgacatagatgttatctgaaaaaaatatcagattcattgaatttactatgtatcagcactcaacttttatga |
16617548 |
T |
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| Q |
100 |
gtcaatgaaaaaacaaataaagatctgacacaagttttataggcctaccacgttaagcattcgctgaattgcaggattttgctcttcagaaccgagagta |
199 |
Q |
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| T |
16617549 |
gtcaatgaaaaaataaataaggtgcaagcacaag-tttataggcctaccacttttatcaatctttgcatttcaggacatagctcttcagaaccaagagta |
16617647 |
T |
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| Q |
200 |
ggcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaatc |
253 |
Q |
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| T |
16617648 |
ggtttctgagaatcttgattttgattattgctttcttctttcaagggtgaaatc |
16617701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 16793156 - 16793385
Alignment:
| Q |
20 |
tgcttcaggcgaaatggatgtcagctgaaaataattt-agattcatagaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaata |
118 |
Q |
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| T |
16793156 |
tgctttaggcgaaatagatgccatctaaaaataatatcaaattcaaagaatttactacgtatcaacactcaacttttacgagttaatgagaaaacaaata |
16793255 |
T |
|
| Q |
119 |
aagatctgacacaagttttataggcctaccacgttaagcattcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgat |
218 |
Q |
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| T |
16793256 |
aagg-----cacaagttttagaggccaaccactttaatcggtcgctgtactgcagaactttgctctttaaaaccaagagtaggtttccgagaatcttgat |
16793350 |
T |
|
| Q |
219 |
tttgattattgttttctttaatcaagggtgaaatc |
253 |
Q |
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| T |
16793351 |
tttgattattggtttctttaatcaagggagaaatc |
16793385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 16638672 - 16638909
Alignment:
| Q |
19 |
gtgcttcaggcgaaatggatgtcagctgaaaataattt--agattcatagaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaa |
116 |
Q |
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|||||| ||| ||||| ||||||| ||||||| || | |||||||| |||||||||||||||||||||||| || |||| ||||||||| |||| || |
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| T |
16638672 |
gtgcttgaggtgaaatagatgtcatctgaaaaaaaatatcagattcattgaatttactatgtatcagcactcaacttttacgagtcaatgacaaaatcaa |
16638771 |
T |
|
| Q |
117 |
taaagatctgacacaagt-tttataggcctaccacgttaagcattcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaactt |
215 |
Q |
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||| | | || || |||||||||||||| | |||| || ||| || ||| ||||| || |||||||||||||||||||||| || |||||||||| |
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| T |
16638772 |
taaggggaaggcataatagtttataggcctaccgctttaatcaatcgttgcatttcaggacttagctcttcagaaccgagagtaggtttctgagaaactt |
16638871 |
T |
|
| Q |
216 |
gattttgattattgttttctttaatcaagggtgaaatc |
253 |
Q |
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|||| ||||||||| |||||| ||||| ||||||||| |
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| T |
16638872 |
gattatgattattgatttcttctatcaatggtgaaatc |
16638909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 252
Target Start/End: Original strand, 16629832 - 16630028
Alignment:
| Q |
57 |
agattcatagaatttactatgtatcagcactcatctcttacaagtcaatgaaaaaacaaataaagatctgacacaagt-tttataggcctaccacgttaa |
155 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || |||| ||| || | |||| |||||| || | | || || |||||||||| ||| | |||| |
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| T |
16629832 |
agattcattgaatttactatgtatcagcactcaacttttacgagttgattacaaaataaataaggagcaggcataaaagtttataggccaaccgctttaa |
16629931 |
T |
|
| Q |
156 |
gcattcgctgaattgcaggattttgctcttcagaaccgagagtaggcttttgagaaacttgattttgattattgttttctttaatcaagggtgaaat |
252 |
Q |
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| T |
16629932 |
tcaatcgttgcatttgaggactttgctcttcagaaccgagagtaggtttctgacaaacttgattatgattattgctttcttctatcaatggtgaaat |
16630028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 21459218 - 21459278
Alignment:
| Q |
22 |
cttcaggcgaaatggatgtcagctgaaaataat-ttagattcatagaatttactatgtatc |
81 |
Q |
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| T |
21459218 |
cttcaggagaaatggatgtaagctgaaaataatatcagaatcatagagtttactacgtatc |
21459278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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