View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19908_low_1 (Length: 358)
Name: NF19908_low_1
Description: NF19908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19908_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 339
Target Start/End: Complemental strand, 2413398 - 2413075
Alignment:
| Q |
16 |
atgaaagaagcaagagctgcaattcgccacgcgacagattatctcctcaaatgtgcaacatcaacacctggaagactctatgttggtgttggagatccaa |
115 |
Q |
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| T |
2413398 |
atgaaagaagcaagagctgcaattcgccacgcgacagattatctcctcaaatgtgcaacatcaacacctggaagactctatgttggtgttggagatccaa |
2413299 |
T |
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| Q |
116 |
atgttgatcacaaatgttgggaaagaccagaagatatggacactgttagaactgtttattacgtatcttcaaagaatcctggttctgatgttgccgctga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
2413298 |
atgttgatcacaaatgttgggaaagaccagaagatatggacactgttagaactgtttatttcgtatcttcaaagaatcccggttctgatgttgccgctga |
2413199 |
T |
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| Q |
216 |
aaccgctgctgcacttgctgcggcgtctattgtttttagaaaagttgatccaacttattctaagcttttgttgaggactgcacaaaaggtttatcagttt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2413198 |
aaccgctgctgcacttgctgcggcgtctattgtttttagaaaagttgatccaacttattctaagcttttgttgaggactgcacaaaaggtttatcagttt |
2413099 |
T |
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| Q |
316 |
gctttgcagtatcaaggttcatac |
339 |
Q |
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|||||||||||||||||||||||| |
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| T |
2413098 |
gctttgcagtatcaaggttcatac |
2413075 |
T |
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