View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19908_low_2 (Length: 357)
Name: NF19908_low_2
Description: NF19908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19908_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 5949143 - 5948805
Alignment:
| Q |
9 |
agcacagagggttctaagataacataaacataaactgcatatactactatactgccttaaagctattagcagggtttgattattgatcatatatcacctc |
108 |
Q |
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| T |
5949143 |
agcacagagggttctaagataacataaacataaactgcatatactactaaactgccttaaagctattagcagggtttgattattgatcatatatcacctc |
5949044 |
T |
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| Q |
109 |
ttataataatta---gttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatca |
205 |
Q |
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| T |
5949043 |
ttataataattattagttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccgtctttattggcatca |
5948944 |
T |
|
| Q |
206 |
gctttcatcaaacaacgattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaatgaccatcgttat |
305 |
Q |
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| T |
5948943 |
gctttcatcaaacaacgattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaacgaccatcgttat |
5948844 |
T |
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| Q |
306 |
tgatatccgccttttctaatttttcgataatgttccttt |
344 |
Q |
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| T |
5948843 |
tgatatccgccttttctaatttttcgataatgttccttt |
5948805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 28 - 344
Target Start/End: Complemental strand, 5954770 - 5954452
Alignment:
| Q |
28 |
taacataaacataaactgcatata--ctactata--ctgccttaaagctattagcagggtttgattattgatcatatatcacctcttataataattagtt |
123 |
Q |
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| T |
5954770 |
taacataaacacaaactgcatatatactactatatactgcattaaagctattagcatgatttgattattgatcatatatcacctctta--ataattagtt |
5954673 |
T |
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| Q |
124 |
cttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaacga |
223 |
Q |
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| T |
5954672 |
cttgccaaaaccacgggtaaggagataatcaattaaagtgtcgatttcctcgccactgatttgtccgtctttgttggcatcagctttcatgaaacaaaat |
5954573 |
T |
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| Q |
224 |
ttggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaatgaccatcgttattgatatccgccttttcta |
323 |
Q |
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| T |
5954572 |
atggctctcaatccagggtagtaagaacctaaatcctttagagcttttttgagctcttcctttgtgtaacgaccgtcgttattgatatctgctttttcca |
5954473 |
T |
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| Q |
324 |
atttttcgataatgttccttt |
344 |
Q |
| |
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| T |
5954472 |
atttttcgataatgttccttt |
5954452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 122 - 330
Target Start/End: Complemental strand, 5937836 - 5937628
Alignment:
| Q |
122 |
ttcttgccaaaaccacgagtgaggagataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaac |
221 |
Q |
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| T |
5937836 |
ttctttccaaaaccacgggtaaggagataatcaattaaagtatcaatttcctcaccactgatttctccatctttgttgaaatcagctttaaccaaacaac |
5937737 |
T |
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| Q |
222 |
gattggctctccatccagggtagtaagaacctaaatcctttagagcttttttgagttccttctttgtgtaatgaccatcgttattgatatccgccttttc |
321 |
Q |
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||||||| ||||||||||| ||||||||||||||||| |||||||||||||| || || | ||||||||| |||| |||||||||||||| |||||||| |
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| T |
5937736 |
gattggccctccatccaggatagtaagaacctaaatcttttagagctttttttagctcttcttttgtgtaacgaccgtcgttattgatatctgccttttc |
5937637 |
T |
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| Q |
322 |
taatttttc |
330 |
Q |
| |
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|||||||| |
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| T |
5937636 |
caatttttc |
5937628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 5960894 - 5960800
Alignment:
| Q |
146 |
agataatcaactaaagtgtcgatttcctcgccactgattagtccatctttattggcatcagctttcatcaaacaacgattggctctccatccagg |
240 |
Q |
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||||||||||||||||| || |||||||| ||||| ||| ||||||| || ||||||||| | || | || |||||| |||||||||||||||| |
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| T |
5960894 |
agataatcaactaaagtatcaatttcctcaccactaatttgtccatcattgttggcatcaacattgaccatacaacgcatggctctccatccagg |
5960800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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