View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19908_low_3 (Length: 278)
Name: NF19908_low_3
Description: NF19908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19908_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 94 - 265
Target Start/End: Original strand, 2592554 - 2592726
Alignment:
| Q |
94 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtggtg |
193 |
Q |
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| T |
2592554 |
ggcgattgaaacctgtagaaggaaaggttatttgattttgaagatacttgcatacaaaagatgtattggatcatttggtatttgactgtacaaagtgctg |
2592653 |
T |
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| Q |
194 |
gttttttcttgaatgat-aataatgggtttaccttttcaacatttgtgtctcctttatacaagaaccacaggt |
265 |
Q |
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| T |
2592654 |
gttttttcttgaatgataaataatgggtttgccttttcaacatttgtgtctcttttatacaacaaccacaggt |
2592726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 2592477 - 2592527
Alignment:
| Q |
17 |
atgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
67 |
Q |
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| T |
2592477 |
atgtataacgaggcttgaagtgttttgttgagtgttttgacatggaagagg |
2592527 |
T |
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