View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_10 (Length: 386)
Name: NF19909_high_10
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 34397196 - 34396838
Alignment:
| Q |
16 |
aaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgttgctgtttcttcaca |
115 |
Q |
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| T |
34397196 |
aaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatccaccacgaatgagagagtttgttcctgtttctgtttcttcaca |
34397097 |
T |
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| Q |
116 |
ctcaagcagaagtttctttgcaacatgagacctacacttggcaacatcttcaaactgagcttcatcatcccacacagtttctagtcgacgaattcgacga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34397096 |
ctcaagcagaagtttctttgcaacatgagacctacacttggcaacatcttcaaactgagcttcatcatcccacacagtttctagtcgacgaattcgacga |
34396997 |
T |
|
| Q |
216 |
agagaagtgagcttaatgagaagatttgtatcatgatggagaagctcggcaactaaatcatagagaccatttgcagctgctaaatcaataggtgttgcat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34396996 |
agagaagtgagcttaatgagaagatttgtatcatgatggagaagctcagcaactaaatcatagagaccatttgcagctgctaaatcaataggtgttgcat |
34396897 |
T |
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| Q |
316 |
accaccattggtctcctgtgctctcccaacgtagaggaaagtaagaaggtgccatattc |
374 |
Q |
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| T |
34396896 |
accaccattggtctcctgtgctctcccaacgtagaggaaagtaagaaggtgccatattc |
34396838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 282 - 361
Target Start/End: Original strand, 38831886 - 38831965
Alignment:
| Q |
282 |
ccatttgcagctgctaaatcaataggtgttgcataccaccattggtctcctgtgctctcccaacgtagaggaaagtaaga |
361 |
Q |
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| T |
38831886 |
ccatttgctgctgctaaatcgattggtgatgcgtaccaccattgttgtcctgtgctttcccaacggagaggaaaataaga |
38831965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 38831611 - 38831669
Alignment:
| Q |
16 |
aaacaaactccaaatcaccagcagaagcagcagtgtacaaaagccatccaccatatcca |
74 |
Q |
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||||||| |||| ||||||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
38831611 |
aaacaaattccatatcaccagctgaagcagcagtgtaaagaagccatccaccatatcca |
38831669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 7997452 - 7997501
Alignment:
| Q |
306 |
ggtgttgcataccaccattggtctcctgtgctctcccaacgtagaggaaa |
355 |
Q |
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|||| |||||||||||||||||| || || ||||||||||| |||||||| |
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| T |
7997452 |
ggtgatgcataccaccattggtcaccggtactctcccaacgaagaggaaa |
7997501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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