View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_14 (Length: 361)
Name: NF19909_high_14
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_14 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 2222 - 2568
Alignment:
| Q |
15 |
tttcatcatttttagacttccaaataaatcaacatccaataaagagtgtgttatactaaccggttacatacatcttgaacaactgcatgattagttgatt |
114 |
Q |
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| T |
2222 |
tttcatcatttttagacttccaaataaatcaacatccaataaag--tgtgttatactaaccggttacatacatcttgaacaactgcatggttagttgatt |
2319 |
T |
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| Q |
115 |
atagtggaacgtgggttcaatccgctccatgcatttagtgt--gtgtgacttatgtcactaaactctttggaaaaaaggaagtaaaagatgataaagcta |
212 |
Q |
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| T |
2320 |
atagtggaacgtgggttcaatccgctccatgcatttagtgtgtgtgtgacttgtgtcactaaactctttggaaaaaaggaagtaaaagatgataaagcta |
2419 |
T |
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| Q |
213 |
tattaattgtttactatgattatgaatgacatgtaagagaagaataaagtttgcaacaactgctagtggaaacaattaagacatgtgcactctctctcgt |
312 |
Q |
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| T |
2420 |
tattaattgtttactatgattatgaatgacatgtaagagaagaataaagtttgcaacaactgctggtggaaacaattaagacatgtgcactctctctcgt |
2519 |
T |
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| Q |
313 |
gctctctcactcaacaaattaaaaaccctctcattcatgtgaaaactct |
361 |
Q |
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| T |
2520 |
gctctctcactcaacaaattaaaaaccctctcattcatgtgaaaactct |
2568 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 17488311 - 17488227
Alignment:
| Q |
13 |
agtttcatcatttttagacttccaaataaatcaacatccaat---aaagagtgtgttatactaaccggttacatacatcttgaac |
94 |
Q |
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| T |
17488311 |
agtttcgtcatttctagacttctaaataaatcaacatccaataaaaaagagtgtgttatactaatcagttgcatgcattttgaac |
17488227 |
T |
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