View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_15 (Length: 360)
Name: NF19909_high_15
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 3 - 343
Target Start/End: Complemental strand, 17431326 - 17430986
Alignment:
| Q |
3 |
catgtccaagaatatcaattagtaccctattggttttaggttttgcttcgaatcatgctacaatttatttcattagtaggctactggtctattttcactc |
102 |
Q |
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| T |
17431326 |
catgtcccaaaaaatcaattagtaccctattggttttaggttttgcttcgaatcatgctacaatttatttcattagtaggctactagtctattttcactc |
17431227 |
T |
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| Q |
103 |
ctatagctatatctattcacacctgattaaaatattttcacaatcataatttaaaacttcacttaaatcagtaggctactagtcttatatgttccatcta |
202 |
Q |
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| T |
17431226 |
ctatagctatatctattcacacctgattaaaatattttcacaatcataatttaaaacttcacttaaatcagtaggctactagtcttatatgctccatcta |
17431127 |
T |
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| Q |
203 |
aaataatcacttctacaaccttagacactaatatgcaactactgagctctagcacaggtgattgatgtccagggtgtatgagtgttgtaaaccctggata |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17431126 |
aaataatcacttctacaaccttagacactaatatgcaactactgagctctagcacaggtgattgatgtccagggtgtatgagtgttgtaaaccctggata |
17431027 |
T |
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| Q |
303 |
ccgagtttcattcctaatgatataaattggacaaatataag |
343 |
Q |
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| T |
17431026 |
ccgagtttcattcctaatgatataaattggacaaatataag |
17430986 |
T |
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