View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_18 (Length: 352)
Name: NF19909_high_18
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 29427889 - 29427550
Alignment:
| Q |
13 |
aaaataaatggaaaacataccttcttgagacaaaaggaacaattccaaaagtcattccacaagcagcttgaacaaaaacagaaaatatgagcataacaac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29427889 |
aaaataaatggaaaacataccttcttgagacaaaaggaacaattccaaaagtcattccacaagcagcttgaacaaaaacagaaaatatgagcataacaac |
29427790 |
T |
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| Q |
113 |
aacagacacactcaaagatccaacaagtcccaagatcacacaaaaaacaccagccaatgtttgacaaatccacaaacaccataatctacccctcattcca |
212 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29427789 |
aacagacacacttaaagatccaacaagtcccaagatcacacaaaaaacaccagccaatgtttgacaaatccacaaacaccataatctacccctcattcca |
29427690 |
T |
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| Q |
213 |
aatcttttagccattaaatcagataataaacctcctccaggtctagaaaaaacattagccaaaccaaaacttgcagcaatgattccagcagtgtgaagtt |
312 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29427689 |
aatctcttagccattaaatcagataataaaccacctccaggtctagaaaaaacattagccaaaccaaaacttgcagcaatgattccagcagtgtgaagtt |
29427590 |
T |
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| Q |
313 |
taaggttaaacttgtcataaaaatattcagctatgatatt |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29427589 |
taaggttaaacttgtcataaaaatattcagctatgatatt |
29427550 |
T |
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