View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_20 (Length: 321)
Name: NF19909_high_20
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 43521990 - 43522289
Alignment:
| Q |
17 |
gctcaaacatattaagtcaataatgttatacatgtgatgtgagttaattagtagaaattctttggacaatattcaaccctttagtgtttgtggaaggagt |
116 |
Q |
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| T |
43521990 |
gctcaaacatattaagtcaataatgttatacatgtgatgtgagttaattagtagaaattctttggacaatattcaaccctttagtgtttgtggaaggagt |
43522089 |
T |
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| Q |
117 |
gatgtaatgactaatgaga--tattagaccagtgtagcaatgtggaccaaagctatatattttatggtcaaatgagaacgtgcatctggtttaaagttgg |
214 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43522090 |
gatgtaatgactaatgagagatattagaccagtgtagcaatgtggaccaaagctatatattttatggtcaaatgagaacgtgcatatggtttaaagttgg |
43522189 |
T |
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| Q |
215 |
taatgcttaagtagtggattggactttagttgaatataactggtctatctattatatgtgctgggattttgcttcttttagtatacattggttcatctca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43522190 |
taatgcttaagtagtggattggactttagttgaatataactggtctatctattatatgtgctgggattttgcttcttttagtatacattggttcatctca |
43522289 |
T |
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