View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_21 (Length: 313)
Name: NF19909_high_21
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_21 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 313
Target Start/End: Complemental strand, 47551376 - 47551076
Alignment:
| Q |
18 |
caatttggataaaactggttcaataataagaatataatatctaagttacacatcagccattgattaatcaaagcattct--atcaatattaagaaacata |
115 |
Q |
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| T |
47551376 |
caatttggataaaactgattcaataataagaacataatatctaagttacacatcagccattgattaatcaaagcattctcaatcaatattaagaaacata |
47551277 |
T |
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| Q |
116 |
aaaacaatttaccaaccatgtcaacaatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattccta |
215 |
Q |
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| T |
47551276 |
aaaacaatttaccaaccaagtcaacaatatatgttccaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattccta |
47551177 |
T |
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| Q |
216 |
actcatgaattttcccagttaaacaaattaacaaggggccttaactttcaaat----aagaaaagtattgtttcagaacaatgtgttcatgaaaacatca |
311 |
Q |
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| T |
47551176 |
actcatgaagtttcccagttaaacaaattaacaa-gggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatca |
47551078 |
T |
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| Q |
312 |
tg |
313 |
Q |
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| T |
47551077 |
tg |
47551076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 54 - 313
Target Start/End: Complemental strand, 47538571 - 47538303
Alignment:
| Q |
54 |
atatctaagttacacatcagccattgattaatcaaagcat--tct--atcaatattaagaaacataaaaacaatttaccaaccatgtcaacaatatatgt |
149 |
Q |
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| T |
47538571 |
atatctaagttacacatcagccattgattaatcaaaacacagtctgaatcaatattgagaaacataaaaacaatttaccaa----gtcaacaatatatgt |
47538476 |
T |
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| Q |
150 |
ttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatc--tgctaccctaattcctaactcatgaattttcccagttaaacaaattaac |
247 |
Q |
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| T |
47538475 |
tccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaacgaattaac |
47538376 |
T |
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| Q |
248 |
aag---gggccttaactttcaaat----aagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatg |
313 |
Q |
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| T |
47538375 |
aagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatg |
47538303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 54 - 313
Target Start/End: Complemental strand, 47545128 - 47544860
Alignment:
| Q |
54 |
atatctaagttacacatcagccattgattaatcaaagcat--tct--atcaatattaagaaacataaaaacaatttaccaaccatgtcaacaatatatgt |
149 |
Q |
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| T |
47545128 |
atatctaagttacacatcagccattgattaatcaaaacacagtctgaatcaatattgagaaacataaaaacaatttaccaa----gtcaacaatatatgt |
47545033 |
T |
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| Q |
150 |
ttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatc--tgctaccctaattcctaactcatgaattttcccagttaaacaaattaac |
247 |
Q |
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| T |
47545032 |
tccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaacgaattaac |
47544933 |
T |
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| Q |
248 |
aag---gggccttaactttcaaat----aagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatg |
313 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544932 |
aagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatg |
47544860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 47529275 - 47529214
Alignment:
| Q |
252 |
ggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacat |
309 |
Q |
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| T |
47529275 |
ggccttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacat |
47529214 |
T |
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