View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19909_high_22 (Length: 313)
Name: NF19909_high_22
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 45636522 - 45636238
Alignment:
| Q |
16 |
atgcagagaaatcttagaggatccgctnnnnnnngagttttttcatttgcaaaacgacctaacaaaattcgaaagaactaattcttctaaagtccttttc |
115 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45636522 |
atgcagagaaatcgtagaggatccgctaaaaaaagagttttttcatttgcaaaacgacctaacaaaattcgaaagaactaattcttctaaagtccttttc |
45636423 |
T |
|
| Q |
116 |
atgttgagaatctacttatttgaaaagatgatcaaatcatttgatttgttggtcacaagttggcaagtgttaaggcaagagaaagagataaaggtttgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45636422 |
atgttgagaatctacttatttgaaaagatgatcaaatcatttgatttgttggtcacaagttggcaagtgttaaggcaagagaaagagataaaggtttgtt |
45636323 |
T |
|
| Q |
216 |
taaagggaaacttgagagaatggacagaaaaataactcaattatgtgaaaaattgtttgagttgagtcaaaacatagataatgat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45636322 |
taaagggaaacttgagagaatggacagaaaaataactcaattatgtgaaaaattgtttgagttgagtcaaaacatagataatgat |
45636238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University