View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_3 (Length: 640)
Name: NF19909_high_3
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Original strand, 924149 - 924767
Alignment:
| Q |
1 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaagggatcggagtgtgatttgggttagatcaattctctcttct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
924149 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaaggggtcggagtgtgatttgggttagatcaattctctcttct |
924248 |
T |
|
| Q |
101 |
ttggcacctggtttggaagaaatagaagttatctccatctcaacacttgtttctttcnnnnnnnagtgcttactcttgtgttttcttttatcttggttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
924249 |
ttggcacctggtttggaagaaatagaagttatctccatctcaacacttgtttctttctttttttagtgcttactcttgtgttttcttttatcttggttaa |
924348 |
T |
|
| Q |
201 |
ttgggatgcattaaagtgttgaattttaggctatttatataggtcatggaaatgnnnnnnnggacaagtagagttaaaggaagttgcacggaagaaggta |
300 |
Q |
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| T |
924349 |
tttggatgcattaaagtgttgaattttaggctatttatataggtcatggaaatgaaaaaaaggacaagtagagttaaaggaagttgcacggaagaaggt- |
924447 |
T |
|
| Q |
301 |
tcaagttgggatcaagcaagaaaaaggtagtaactagtaagggatttcaaggctgcttcatgtctctgcctgccatggttgacttgaatatgcattaaaa |
400 |
Q |
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| T |
924448 |
----------atcaagcaagaaaaaggtagtaaatagtaagggatttcaaggctgctttatgtctctgcctgccatggttgacttgaatatgcattaaaa |
924537 |
T |
|
| Q |
401 |
tggatccaagcctatgaaattctttatatatgctagcaaaaattatatannnnnnnnaatacttgtagagaaaaataaattaatcatccattattgatat |
500 |
Q |
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| T |
924538 |
tggatccaagcctatgaaattctttatatatgctagcaaaaattatattatttttttaatacttgtagagaaaaataaattaatcatccattattgatat |
924637 |
T |
|
| Q |
501 |
ataactataatcatcgcaattaaccnnnnnnntatttgtgatcaaaatacaaaatgtaattgtttttatctaaatcatatatactccaacacctaagtta |
600 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
924638 |
ataactataatcatcgcaattaaccaaaaaaatatttgtgatcaaaatacaaaatgtaattgtttttatctaaatcatatatactccaacacctaagtta |
924737 |
T |
|
| Q |
601 |
tttttggacaggttttgacccctatgctac |
630 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
924738 |
tttttggacaggttttgacccctatgctac |
924767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 939429 - 939558
Alignment:
| Q |
1 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaagggatcggagtgtgatttgggttagatcaattctctcttct |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || | |||||||||||||||| | | |||||| || | ||| |
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| T |
939429 |
cttggccactttttcatcagttctccataccatgagatcatcaaggtcagaaagatgaaaaggtcggagtgtgatttggttcaaatcaatgctttgttca |
939528 |
T |
|
| Q |
101 |
ttggcacctggtttggaagaaatagaagtt |
130 |
Q |
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||| ||| |||||||||||||||| ||||| |
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| T |
939529 |
ttgccacttggtttggaagaaataaaagtt |
939558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 276 - 418
Target Start/End: Original strand, 926414 - 926548
Alignment:
| Q |
276 |
aaaggaagttgcacggaagaaggtatcaagttgggatcaagcaagaaaaaggtagtaactagtaagggatttcaaggctgcttcatgtctctgcctgcca |
375 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||| || | ||||| |||||||||||||||||||||||||||||| || |
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| T |
926414 |
aaaggaagttgcacggaagaaaggtcgaagttgggatcaagcaagaaa------gtga--agtaatggatttcaaggctgcttcatgtctctgcctacct |
926505 |
T |
|
| Q |
376 |
tggttgacttgaatatgcattaaaatggatccaagcctatgaa |
418 |
Q |
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| T |
926506 |
tggttgacttgaatatgcattaaatgggatccaaacctatgaa |
926548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 928504 - 928642
Alignment:
| Q |
1 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaagggatcggagtgtgatttgggttagatcaattctctcttct |
100 |
Q |
| |
|
||||||||| ||||||||||| ||| | ||| | ||||||||||||||||||||||| ||||||||||||||||||| | | |||||| | |||||| |
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| T |
928504 |
cttggccaccttttcatcagtatgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcaatgatttcttct |
928603 |
T |
|
| Q |
101 |
ttggcacctggtttggaagaaatagaagttatctccatc |
139 |
Q |
| |
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||| ||| |||||| ||||||||| ||||| ||||||| |
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| T |
928604 |
ttgccacatggttttgaagaaataaaagtttcctccatc |
928642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 926184 - 926316
Alignment:
| Q |
1 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaagggatcggagtgtgatttgggttagatcaat--tctc-tct |
97 |
Q |
| |
|
||||||||||||||||||||| ||| | ||| | ||||||||||||||||||||||| ||||||||||||||||||| | | ||| || |||| ||| |
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| T |
926184 |
cttggccactttttcatcagtctgccacaccattacatcatcaaggtcagaaagattaaaggatcggagtgtgatttggttcaaatcgatgatctcttct |
926283 |
T |
|
| Q |
98 |
tctttggcacctggtttggaagaaatagaagtt |
130 |
Q |
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|||||||||| ||||||||| |||||| ||||| |
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| T |
926284 |
tctttggcacatggtttggaggaaataaaagtt |
926316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 935637 - 935740
Alignment:
| Q |
1 |
cttggccactttttcatcagttgtccatatcatgagatcatcaaggtcagaaagattaagggatcggagtgtgatttgggttagatcaattctctcttct |
100 |
Q |
| |
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||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||| |||||||||||||||||| | | |||||| |||||||| |
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| T |
935637 |
cttggccactttttcatcagtgtgccacaccatgagatcatcgaggtcagaaagattaaaagatcggagtgtgatttggttcaaatcaatgatctcttct |
935736 |
T |
|
| Q |
101 |
ttgg |
104 |
Q |
| |
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|||| |
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|
| T |
935737 |
ttgg |
935740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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