View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_36 (Length: 234)
Name: NF19909_high_36
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 28825247 - 28825016
Alignment:
| Q |
3 |
tttctttggcgatcacacactggacaatcatctttcttggattggaaatttaagtgtctccattttctttctttttcaatcattcttaggtttatgagtt |
102 |
Q |
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| T |
28825247 |
tttctttggcgatcacacactgaacaatcatctttcttggattggaaatttaagtgtctccattttctttctttttcaatcattcttaggtttatgagtt |
28825148 |
T |
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| Q |
103 |
atagattttcaaatttgccttatcataatatcacacaaaatttcacatatttccatcaaagaataagtccattaaatcattttatcaaacatgaaattga |
202 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28825147 |
ataggttttcaaatttgccttatcataatatcacacaaaattccacatctttccatcaaagaataagtccattaaatcattttatcaaacatgaaattga |
28825048 |
T |
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| Q |
203 |
aagaaactcaaagaaatgaccaggtgcctaat |
234 |
Q |
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|||||||||||||||||| ||||||||||||| |
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| T |
28825047 |
aagaaactcaaagaaatgtccaggtgcctaat |
28825016 |
T |
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