View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_43 (Length: 209)
Name: NF19909_high_43
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 29213716 - 29213881
Alignment:
| Q |
25 |
aataaggcaagttaattatttcacacgtatgtgcttttaatannnnnnnggtggtgatatgtacttttaatatgtttcctcttttttctnnnnnnnnnnn |
124 |
Q |
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| T |
29213716 |
aataaggcaagttaattatttcacacgtatgtgcttttaatatttttttggtggtgatatgtacttttaatatgtttcctcttttttctaaaacaaaaaa |
29213815 |
T |
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| Q |
125 |
nnnnnnnnnnnntaatataaacattatgtatcttgtgcgtaccagaatctatgatgtatttctcgc |
190 |
Q |
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| T |
29213816 |
gaaaaaacaaaataatataaacattatgtatcttgtgcgtaccagaatctatgatgtatttctcgc |
29213881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 29213667 - 29213708
Alignment:
| Q |
25 |
aataaggcaagttaattatttcacacgtatgtgcttttaata |
66 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
29213667 |
aataaggcaagttaattatttcacacgtatgtccttctaata |
29213708 |
T |
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