View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19909_high_44 (Length: 205)
Name: NF19909_high_44
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 46793528 - 46793353
Alignment:
| Q |
13 |
aagaatattattcgcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttataaagaattgttcctccaaattctgttgat |
112 |
Q |
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| T |
46793528 |
aagaaaattattcgcaatagcattgaagagcaatgttgaacacattttctttcatgaaaatgtcgttttacaaagaattgttcctccaaattctgttgat |
46793429 |
T |
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| Q |
113 |
tttctctttgattgctcttagttcccaaactcgttatcaaacaaagagtcattataattttgttgtgagtcctatc |
188 |
Q |
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| T |
46793428 |
tttctctttgattgctcttagttcccaaactcgttatcaaacaaagagtcattataattttgttgtgagtcctatc |
46793353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 46785121 - 46785037
Alignment:
| Q |
58 |
tttctttcatgaaaatgtcgttttataaagaattgttcctccaaattctgttgattttctctttgattgctcttagttcccaaactcg |
145 |
Q |
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| T |
46785121 |
tttctttcatgaaaatgtcgttttacaaagaattgt---tccaaactttgttgatttattctttcattactcttagttcccaaactcg |
46785037 |
T |
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