View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19909_high_45 (Length: 201)
Name: NF19909_high_45
Description: NF19909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19909_high_45 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 2345633 - 2345806
Alignment:
| Q |
13 |
cagagataaaagttcaaatgaccaatccaagttagaacacataccttctgaaataactaattttccaattattgatttatttcatctttatcgtccgaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2345633 |
cagagataaaagttcaaatgaccaatccaagttagaacacataccttctgaaataactaattttccaattattgatttatctcatctttatcgtccgaca |
2345732 |
T |
|
| Q |
113 |
tccatcatctagtggctgatgcttccaaaattctatcttattgattcttattttaggtctaaatctgttacaaa |
186 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2345733 |
tccatcatctagtggctgatgttttcaaaattctatcttattgattcttattttaggtctaaatctgttacaaa |
2345806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 2338692 - 2338769
Alignment:
| Q |
13 |
cagagataaaagttcaaatgaccaatccaagttagaacacataccttctgaaataactaattttccaattattgattt |
90 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | |||| ||||||| ||||| |
|
|
| T |
2338692 |
cagagataaaagctcaaatgaccaatccaagttagaacacaaaccttctgaaataaccattttttcaattatagattt |
2338769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University